Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.translation elongation.eEF2 mRNA-translocation factor activity.mRNA-translocation factor (eEF2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica oleracea C3 1 CH_bol_310 2 5 0.000196117
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_258 2 4 0.000496709
Carya illinoinensis Chr11 1 CH_cil_102 4 5 0.00000000000357217
Citrullus lanatus CG_Chr02 1 CH_cla_86 3 20 0.0000134477
Chenopodium quinoa C_Quinoa_Scaffold_2185 1 CH_cqu_585 2 4 0.000852811
Cucumis sativus L. chr6 1 CH_csa_317 2 3 0.000751231
Fragaria x ananassa Fvb3-4 1 CH_fan_547 2 2 0.000518101
Fragaria x ananassa Fvb3-2 1 CH_fan_548 2 2 0.000518101
Fragaria x ananassa Fvb3-1 1 CH_fan_549 2 3 0.000518101
Fragaria vesca Fvb3 1 CH_fve_380 2 4 0.00035344
Glycine max Gm15 1 CH_gma_386 2 2 0.000113867
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_457 2 2 0.000308404
Malus domestica Chr10 1 CH_mdo_571 2 2 0.000227527
Malus domestica Chr05 1 CH_mdo_722 2 3 0.000682551
Medicago truncatula chr2 1 CH_mtr_408 3 15 0.00000460658
Petunia axillaris Peaxi162Scf00073 1 CH_pax_237 2 3 0.00021106
Punica granatum NC_045127.1 1 CH_pgr_218 2 2 0.0000750356
Physcomitrium patens Chr11 1 CH_ppa_44 3 9 0.00000189163
Prunus persica Pp04 1 CH_ppe_394 2 3 0.00022378
Populus trichocarpa Chr07 1 CH_ptr_386 2 2 0.0001734
Phaseolus vulgaris Chr05 1 CH_pvu_297 2 2 0.0000734727
Quercus lobata 4 1 CH_qlo_817 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_754 2 6 0.000597931
Salvia bowleyana GWHASIU00000004 1 CH_sbo_471 2 3 0.00081892
Salix brachista GWHAAZH00000007 1 CH_sbr_293 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 1 CH_sci_285 2 3 0.000766229
Solanum lycopersicum SL4.0ch08 1 CH_sly_340 2 2 0.0000586941
Solanum pennellii Spenn-ch08 1 CH_spe_416 2 4 0.000266862
Selenicereus undatus Scaffold_33679 1 CH_sun_136 2 2 0.0000726639
Utricularia gibba unitig_578 1 CH_ugi_221 2 2 0.000220378
Vigna mungo CM024079.1 1 CH_vmu_213 2 2 0.0000646141
Zea mays 1 1 CH_zma_77 3 6 0.000000313695
Brassica oleracea C3 2 CH_bol_310 2 5 0.000196117
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_258 2 4 0.000496709
Carya illinoinensis Chr11 2 CH_cil_102 4 5 0.00000000000357217
Citrullus lanatus CG_Chr02 2 CH_cla_86 3 20 0.0000134477
Chenopodium quinoa C_Quinoa_Scaffold_2185 2 CH_cqu_585 2 4 0.000852811
Cucumis sativus L. chr6 2 CH_csa_317 2 3 0.000751231
Fragaria x ananassa Fvb3-4 2 CH_fan_547 2 2 0.000518101
Fragaria x ananassa Fvb3-2 2 CH_fan_548 2 2 0.000518101
Fragaria x ananassa Fvb3-1 2 CH_fan_549 2 3 0.000518101
Fragaria vesca Fvb3 2 CH_fve_380 2 4 0.00035344
Glycine max Gm15 2 CH_gma_386 2 2 0.000113867
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_457 2 2 0.000308404
Malus domestica Chr10 2 CH_mdo_571 2 2 0.000227527
Malus domestica Chr05 2 CH_mdo_722 2 3 0.000682551
Petunia axillaris Peaxi162Scf00073 2 CH_pax_237 2 3 0.00021106
Punica granatum NC_045127.1 2 CH_pgr_218 2 2 0.0000750356
Physcomitrium patens Chr11 2 CH_ppa_44 3 9 0.00000189163
Prunus persica Pp04 2 CH_ppe_394 2 3 0.00022378
Populus trichocarpa Chr07 2 CH_ptr_386 2 2 0.0001734
Phaseolus vulgaris Chr05 2 CH_pvu_297 2 2 0.0000734727
Quercus lobata 4 2 CH_qlo_817 2 2 0.000154887
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_754 2 6 0.000597931
Salvia bowleyana GWHASIU00000004 2 CH_sbo_471 2 3 0.00081892
Salix brachista GWHAAZH00000007 2 CH_sbr_293 2 2 0.000189042
Simmondsia chinensis GWHAASQ00000019 2 CH_sci_285 2 3 0.000766229
Solanum lycopersicum SL4.0ch08 2 CH_sly_340 2 2 0.0000586941
Solanum pennellii Spenn-ch08 2 CH_spe_416 2 4 0.000266862
Selenicereus undatus Scaffold_33679 2 CH_sun_136 2 2 0.0000726639
Utricularia gibba unitig_578 2 CH_ugi_221 2 2 0.000220378
Vigna mungo CM024079.1 2 CH_vmu_213 2 2 0.0000646141
Zea mays 1 2 CH_zma_77 3 6 0.000000313695

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001