Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.translation elongation.eEF1 aminoacyl-tRNA binding factor activity.eEF1B eEF1A-GDP-recycling complex.component eEF1B-gamma

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group7 1 CH_ach_260 2 2 0.000814819
Cannabis sativa NC_044375.1 1 CH_cansat_290 2 2 0.000196993
Cucumis melo chr06 1 CH_cme_230 2 2 0.000200133
Corchorus olitorius AWUE01016378.1 1 CH_col_67 2 2 0.000292099
Carica papaya supercontig_113 1 CH_cpa_196 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2389 1 CH_cqu_491 2 2 0.000473821
Cucumis sativus L. chr3 1 CH_csa_201 2 2 0.0000834759
Durio zibethinus NW_019167915.1 1 CH_dzi_279 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_349 2 2 0.000134617
Gossypium raimondii Chr08 1 CH_gra_244 2 2 0.0000536107
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_476 2 3 0.000462586
Oryza sativa ssp. japonica chr02 1 CH_osa_271 2 2 0.000158437
Papaver somniferum NC_039365.1 1 CH_pso_243 3 4 0.000000106529
Quercus lobata CM012294 1 CH_qlo_294 4 8 0.00000000202228
Salvia bowleyana GWHASIU00000005 1 CH_sbo_400 2 3 0.000409466
Solanum lycopersicum SL4.0ch11 1 CH_sly_408 2 2 0.000176082
Solanum pennellii Spenn-ch11 1 CH_spe_526 2 4 0.000800563
Selenicereus undatus Scaffold_2055 1 CH_sun_263 2 3 0.000653935
Theobroma cacao Chromosome_2 1 CH_tca_381 2 3 0.000439399
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_72 4 6 0.00000000126353
Vanilla planifolia CM028154.1 1 CH_vpl_259 2 2 0.000221664
Vitis vinifera chr12 1 CH_vvi_135 3 3 0.0000000347148
Actinidia chinensis Lachesis_group7 2 CH_ach_260 2 2 0.000814819
Cannabis sativa NC_044375.1 2 CH_cansat_290 2 2 0.000196993
Cucumis melo chr06 2 CH_cme_230 2 2 0.000200133
Corchorus olitorius AWUE01016378.1 2 CH_col_67 2 2 0.000292099
Carica papaya supercontig_113 2 CH_cpa_196 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2389 2 CH_cqu_491 2 2 0.000473821
Cucumis sativus L. chr3 2 CH_csa_201 2 2 0.0000834759
Durio zibethinus NW_019167915.1 2 CH_dzi_279 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_349 2 2 0.000134617
Gossypium hirsutum D12 2 CH_ghi_543 2 2 0.000160209
Gossypium hirsutum A12 2 CH_ghi_752 2 3 0.000480613
Gossypium raimondii Chr08 2 CH_gra_244 2 2 0.0000536107
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_476 2 3 0.000462586
Oryza sativa ssp. japonica chr02 2 CH_osa_271 2 2 0.000158437
Papaver somniferum NC_039365.1 2 CH_pso_243 3 4 0.000000106529
Quercus lobata CM012294 2 CH_qlo_294 4 8 0.00000000202228
Salvia bowleyana GWHASIU00000005 2 CH_sbo_400 2 3 0.000409466
Solanum lycopersicum SL4.0ch11 2 CH_sly_408 2 2 0.000176082
Solanum pennellii Spenn-ch11 2 CH_spe_526 2 4 0.000800563
Selenicereus undatus Scaffold_2055 2 CH_sun_263 2 3 0.000653935
Theobroma cacao Chromosome_2 2 CH_tca_381 2 3 0.000439399
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_72 4 6 0.00000000126353
Vanilla planifolia CM028154.1 2 CH_vpl_259 2 2 0.000221664
Vitis vinifera chr12 2 CH_vvi_135 3 3 0.0000000347148

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001