Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.translation elongation.eEF1 aminoacyl-tRNA binding factor activity.aminoacyl-tRNA binding factor (eEF1A)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 1 | CH_acertr_534 | 3 | 26 | 0.000676208 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_95 | 3 | 3 | 0.0000000261404 |
| Avicennia marina | ScioBoG_26769_HRSCAF_26899 | 1 | CH_ama_123 | 2 | 3 | 0.000517331 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 1 | CH_amhyb_16 | 4 | 6 | 0.0000000000268399 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_106 | 3 | 4 | 0.0000000196984 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_43 | 4 | 8 | 0.000000000119169 |
| Chara braunii | BFEA01000221 | 1 | CH_cbr_31 | 3 | 5 | 0.000000775911 |
| Coffea canephora | chr1 | 1 | CH_ccan_373 | 2 | 12 | 0.000843234 |
| Citrus clementina | scaffold_8 | 1 | CH_ccl_161 | 3 | 5 | 0.000000403705 |
| Ceratophyllum demersum | 7 | 1 | CH_cde_58 | 3 | 8 | 0.00000523735 |
| Carpinus fangiana | Cfa06 | 1 | CH_cfa_392 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr13 | 1 | CH_cil_209 | 3 | 3 | 0.0000000576299 |
| Corchorus olitorius | AWUE01019427.1 | 1 | CH_col_104 | 2 | 3 | 0.000876168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 1 | CH_cqu_32 | 6 | 8 | 1.39015e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 1 | CH_cqu_45 | 6 | 16 | 0.0000000000000397121 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_332 | 2 | 2 | 0.000219346 |
| Cucumis sativus L. | chr5 | 1 | CH_csa_127 | 3 | 4 | 0.000000418068 |
| Daucus carota | DCARv2_Chr4 | 1 | CH_dca_125 | 3 | 3 | 0.000000341687 |
| Erythranthe guttata | scaffold_4 | 1 | CH_egut_77 | 4 | 6 | 0.0000000000868619 |
| Eutrema salsugineum | scaffold_5 | 1 | CH_esa_98 | 3 | 5 | 0.000000347895 |
| Gossypium hirsutum | D04 | 1 | CH_ghi_348 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | A04 | 1 | CH_ghi_399 | 3 | 4 | 0.00000757454 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_170 | 3 | 3 | 0.00000071136 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_132 | 4 | 8 | 0.00000000157818 |
| Manihot esculenta | Chromosome15 | 1 | CH_mes_173 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome03 | 1 | CH_mes_191 | 3 | 4 | 0.000000447414 |
| Marchantia polymorpha | scaffold_145 | 1 | CH_mpo_16 | 4 | 4 | 0.000000000848827 |
| Medicago truncatula | chr1 | 1 | CH_mtr_481 | 3 | 6 | 0.0000283416 |
| Nicotiana tabacum | Nitab4.5_0000022 | 1 | CH_nta_15 | 4 | 9 | 0.000000000499331 |
| Oryza sativa ssp. japonica | chr03 | 1 | CH_osa_86 | 3 | 5 | 0.0000000418359 |
| Petunia axillaris | Peaxi162Scf00389 | 1 | CH_pax_311 | 2 | 2 | 0.000422134 |
| Punica granatum | NC_045128.1 | 1 | CH_pgr_151 | 3 | 5 | 0.00000295516 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_65 | 4 | 6 | 0.000000000665306 |
| Physcomitrium patens | Chr02 | 1 | CH_ppa_60 | 4 | 38 | 0.0000106341 |
| Physcomitrium patens | Chr01 | 1 | CH_ppa_7 | 5 | 13 | 0.0000000000342481 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_357 | 4 | 52 | 0.00000924443 |
| Papaver somniferum | NC_039368.1 | 1 | CH_pso_457 | 3 | 15 | 0.000125872 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_147 | 4 | 9 | 0.00000000919121 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_261 | 3 | 6 | 0.00000841518 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_204 | 3 | 4 | 0.000000249841 |
| Salvia bowleyana | GWHASIU00000006 | 1 | CH_sbo_90 | 4 | 8 | 0.000000000692084 |
| Salix brachista | GWHAAZH00000008 | 1 | CH_sbr_393 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 1 | CH_sci_96 | 3 | 8 | 0.00000243495 |
| Sapria himalayana | scaffold8_16897533 | 1 | CH_shi_166 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_556 | 2 | 2 | 0.000880411 |
| Solanum lycopersicum | SL4.0ch11 | 1 | CH_sly_557 | 2 | 3 | 0.000880411 |
| Solanum tuberosum | ST4.03ch06 | 1 | CH_stu_133 | 4 | 17 | 0.0000000144015 |
| Selenicereus undatus | Scaffold_33680 | 1 | CH_sun_16 | 4 | 6 | 0.00000000120832 |
| Selenicereus undatus | Scaffold_33673 | 1 | CH_sun_61 | 3 | 4 | 0.00000177385 |
| Utricularia gibba | unitig_0 | 1 | CH_ugi_10 | 4 | 6 | 0.000000000089189 |
| Acer truncatum | chr12 | 2 | CH_acertr_534 | 3 | 26 | 0.000676208 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_95 | 3 | 3 | 0.0000000261404 |
| Avicennia marina | ScioBoG_26769_HRSCAF_26899 | 2 | CH_ama_123 | 2 | 3 | 0.000517331 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_10 | 2 | CH_amhyb_16 | 4 | 6 | 0.0000000000268399 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_106 | 3 | 4 | 0.0000000196984 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_43 | 4 | 8 | 0.000000000119169 |
| Chara braunii | BFEA01000221 | 2 | CH_cbr_31 | 3 | 5 | 0.000000775911 |
| Coffea canephora | chr1 | 2 | CH_ccan_373 | 2 | 12 | 0.000843234 |
| Citrus clementina | scaffold_8 | 2 | CH_ccl_161 | 3 | 5 | 0.000000403705 |
| Ceratophyllum demersum | 7 | 2 | CH_cde_58 | 3 | 8 | 0.00000523735 |
| Carpinus fangiana | Cfa06 | 2 | CH_cfa_392 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr13 | 2 | CH_cil_209 | 3 | 3 | 0.0000000576299 |
| Corchorus olitorius | AWUE01019427.1 | 2 | CH_col_104 | 2 | 3 | 0.000876168 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3966 | 2 | CH_cqu_32 | 6 | 8 | 1.39015e-16 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2487 | 2 | CH_cqu_45 | 6 | 16 | 0.0000000000000397121 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_332 | 2 | 2 | 0.000219346 |
| Cucumis sativus L. | chr5 | 2 | CH_csa_127 | 3 | 4 | 0.000000418068 |
| Daucus carota | DCARv2_Chr4 | 2 | CH_dca_125 | 3 | 3 | 0.000000341687 |
| Erythranthe guttata | scaffold_4 | 2 | CH_egut_77 | 4 | 6 | 0.0000000000868619 |
| Eutrema salsugineum | scaffold_5 | 2 | CH_esa_98 | 3 | 5 | 0.000000347895 |
| Gossypium hirsutum | D04 | 2 | CH_ghi_348 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | A04 | 2 | CH_ghi_399 | 3 | 4 | 0.00000757454 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_170 | 3 | 3 | 0.00000071136 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_132 | 4 | 8 | 0.00000000157818 |
| Manihot esculenta | Chromosome15 | 2 | CH_mes_173 | 3 | 3 | 0.000000111865 |
| Manihot esculenta | Chromosome03 | 2 | CH_mes_191 | 3 | 4 | 0.000000447414 |
| Marchantia polymorpha | scaffold_145 | 2 | CH_mpo_16 | 4 | 4 | 0.000000000848827 |
| Nicotiana tabacum | Nitab4.5_0000022 | 2 | CH_nta_15 | 4 | 9 | 0.000000000499331 |
| Oryza sativa ssp. japonica | chr03 | 2 | CH_osa_86 | 3 | 5 | 0.0000000418359 |
| Petunia axillaris | Peaxi162Scf00389 | 2 | CH_pax_311 | 2 | 2 | 0.000422134 |
| Punica granatum | NC_045128.1 | 2 | CH_pgr_151 | 3 | 5 | 0.00000295516 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_65 | 4 | 6 | 0.000000000665306 |
| Physcomitrium patens | Chr02 | 2 | CH_ppa_60 | 4 | 38 | 0.0000106341 |
| Physcomitrium patens | Chr01 | 2 | CH_ppa_7 | 5 | 13 | 0.0000000000342481 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_357 | 4 | 52 | 0.00000924443 |
| Papaver somniferum | NC_039368.1 | 2 | CH_pso_457 | 3 | 15 | 0.000125872 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_147 | 4 | 9 | 0.00000000919121 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_261 | 3 | 6 | 0.00000841518 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_204 | 3 | 4 | 0.000000249841 |
| Salvia bowleyana | GWHASIU00000006 | 2 | CH_sbo_90 | 4 | 8 | 0.000000000692084 |
| Salix brachista | GWHAAZH00000008 | 2 | CH_sbr_393 | 2 | 2 | 0.00063014 |
| Simmondsia chinensis | GWHAASQ00000020 | 2 | CH_sci_96 | 3 | 8 | 0.00000243495 |
| Sapria himalayana | scaffold8_16897533 | 2 | CH_shi_166 | 2 | 3 | 0.000171536 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_556 | 2 | 2 | 0.000880411 |
| Solanum lycopersicum | SL4.0ch11 | 2 | CH_sly_557 | 2 | 3 | 0.000880411 |
| Solanum tuberosum | ST4.03ch06 | 2 | CH_stu_133 | 4 | 17 | 0.0000000144015 |
| Selenicereus undatus | Scaffold_33680 | 2 | CH_sun_16 | 4 | 6 | 0.00000000120832 |
| Selenicereus undatus | Scaffold_33673 | 2 | CH_sun_61 | 3 | 4 | 0.00000177385 |
| Utricularia gibba | unitig_0 | 2 | CH_ugi_10 | 4 | 6 | 0.000000000089189 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |