Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 1 CH_amhyb_239 2 2 0.000505051
Aquilegia oxysepala CHR07 1 CH_aox_231 2 2 0.000240597
Cannabis sativa NC_044370.1 1 CH_cansat_364 2 3 0.000590945
Capsicum annuum PGAv.1.6.scaffold208 1 CH_can_113 3 4 0.000000040947
Chara braunii BFEA01000290 1 CH_cbr_22 3 3 0.000000031042
Citrus clementina scaffold_1 1 CH_ccl_399 2 2 0.000246093
Chenopodium quinoa C_Quinoa_Scaffold_1727 1 CH_cqu_440 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3674 1 CH_cqu_441 2 2 0.000284293
Durio zibethinus NW_019167882.1 1 CH_dzi_406 2 2 0.000973326
Helianthus annuus HanXRQChr10 1 CH_han_698 2 2 0.000579643
Lonicera japonica GWHAAZE00000007 1 CH_lonja_212 3 5 0.00000021518
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_501 2 2 0.000514007
Magnolia biondii Chr01 1 CH_mbi_468 2 2 0.000145698
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_670 2 2 0.000239192
Rhododendron simsii chr11 1 CH_rsi_134 4 8 0.00000000394842
Sequoiadendron giganteum chr5 1 CH_sgi_1122 2 2 0.000146145
Solanum lycopersicum SL4.0ch12 1 CH_sly_523 2 2 0.000586941
Solanum pennellii Spenn-ch12 1 CH_spe_483 2 2 0.00044479
Solanum tuberosum ST4.03ch12 1 CH_stu_567 2 2 0.000512453
Theobroma cacao Chromosome_9 1 CH_tca_400 2 2 0.000439432
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_130 3 5 0.00000051803
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 2 CH_amhyb_239 2 2 0.000505051
Aquilegia oxysepala CHR07 2 CH_aox_231 2 2 0.000240597
Cannabis sativa NC_044370.1 2 CH_cansat_364 2 3 0.000590945
Capsicum annuum PGAv.1.6.scaffold208 2 CH_can_113 3 4 0.000000040947
Chara braunii BFEA01000290 2 CH_cbr_22 3 3 0.000000031042
Citrus clementina scaffold_1 2 CH_ccl_399 2 2 0.000246093
Chenopodium quinoa C_Quinoa_Scaffold_1727 2 CH_cqu_440 2 2 0.000284293
Chenopodium quinoa C_Quinoa_Scaffold_3674 2 CH_cqu_441 2 2 0.000284293
Durio zibethinus NW_019167882.1 2 CH_dzi_406 2 2 0.000973326
Helianthus annuus HanXRQChr10 2 CH_han_698 2 2 0.000579643
Lonicera japonica GWHAAZE00000007 2 CH_lonja_212 3 5 0.00000021518
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_501 2 2 0.000514007
Magnolia biondii Chr01 2 CH_mbi_468 2 2 0.000145698
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_670 2 2 0.000239192
Rhododendron simsii chr11 2 CH_rsi_134 4 8 0.00000000394842
Sequoiadendron giganteum chr5 2 CH_sgi_1122 2 2 0.000146145
Solanum lycopersicum SL4.0ch12 2 CH_sly_523 2 2 0.000586941
Solanum pennellii Spenn-ch12 2 CH_spe_483 2 2 0.00044479
Solanum tuberosum ST4.03ch12 2 CH_stu_567 2 2 0.000512453
Theobroma cacao Chromosome_9 2 CH_tca_400 2 2 0.000439432
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_130 3 5 0.00000051803

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001