Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.translation initiation.Pre-Initiation Complex (PIC) module.eIF2 Met-tRNA binding factor activity.eIF2-GTP hydrolysis activating factor (eIF5)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_130 2 2 0.0000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_573 2 2 0.000299383
Capsicum annuum PGAv.1.6.scaffold11 1 CH_can_432 2 3 0.000743443
Cicer arietinum L. Ca_LG3_v3 1 CH_car_155 2 2 0.0000778301
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_348 2 2 0.000134617
Eutrema salsugineum scaffold_9 1 CH_esa_165 2 2 0.0000761499
Helianthus annuus HanXRQChr10 1 CH_han_634 2 2 0.000386429
Lupinus albus Lalb_Chr04 1 CH_lal_301 2 2 0.000314895
Physcomitrium patens Chr06 1 CH_ppa_220 2 2 0.000367636
Physcomitrium patens Chr05 1 CH_ppa_221 2 2 0.000367636
Phaseolus vulgaris Chr08 1 CH_pvu_269 2 2 0.0000734727
Sequoiadendron giganteum chr8 1 CH_sgi_1193 2 4 0.000292277
Solanum lycopersicum SL4.0ch03 1 CH_sly_470 2 2 0.000352164
Solanum lycopersicum SL4.0ch02 1 CH_sly_471 2 2 0.000352164
Solanum pennellii Spenn-ch02 1 CH_spe_428 2 2 0.000266874
Solanum pennellii Spenn-ch03 1 CH_spe_429 2 2 0.000266874
Solanum tuberosum ST4.03ch02 1 CH_stu_507 2 2 0.000307472
Solanum tuberosum ST4.03ch03 1 CH_stu_631 2 3 0.00092236
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_406 2 5 0.000756888
Vigna mungo CM024070.1 1 CH_vmu_191 2 2 0.0000646141
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_130 2 2 0.0000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_573 2 2 0.000299383
Capsicum annuum PGAv.1.6.scaffold11 2 CH_can_432 2 3 0.000743443
Cicer arietinum L. Ca_LG3_v3 2 CH_car_155 2 2 0.0000778301
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_348 2 2 0.000134617
Eutrema salsugineum scaffold_9 2 CH_esa_165 2 2 0.0000761499
Helianthus annuus HanXRQChr10 2 CH_han_634 2 2 0.000386429
Lupinus albus Lalb_Chr04 2 CH_lal_301 2 2 0.000314895
Lotus japonicus chr1 2 CH_lja_316 2 2 0.000214523
Physcomitrium patens Chr06 2 CH_ppa_220 2 2 0.000367636
Physcomitrium patens Chr05 2 CH_ppa_221 2 2 0.000367636
Phaseolus vulgaris Chr08 2 CH_pvu_269 2 2 0.0000734727
Sequoiadendron giganteum chr8 2 CH_sgi_1193 2 4 0.000292277
Solanum lycopersicum SL4.0ch03 2 CH_sly_470 2 2 0.000352164
Solanum lycopersicum SL4.0ch02 2 CH_sly_471 2 2 0.000352164
Solanum pennellii Spenn-ch02 2 CH_spe_428 2 2 0.000266874
Solanum pennellii Spenn-ch03 2 CH_spe_429 2 2 0.000266874
Solanum tuberosum ST4.03ch02 2 CH_stu_507 2 2 0.000307472
Solanum tuberosum ST4.03ch03 2 CH_stu_631 2 3 0.00092236
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_406 2 5 0.000756888
Vigna mungo CM024070.1 2 CH_vmu_191 2 2 0.0000646141

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001