Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.eRF1-eRF3 aberrant mRNA detection complex.component eRF1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_197 2 2 0.000252525
Cannabis sativa NC_044379.1 1 CH_cansat_112 3 5 0.0000000646747
Helianthus annuus HanXRQChr03 1 CH_han_683 2 2 0.000579643
Helianthus annuus HanXRQChr13 1 CH_han_684 2 2 0.000579643
Quercus lobata 9 1 CH_qlo_416 3 4 0.000000159926
Salvia bowleyana GWHASIU00000002 1 CH_sbo_374 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000015 1 CH_sci_216 2 2 0.000255428
Solanum tuberosum ST4.03ch07 1 CH_stu_560 2 2 0.000512453
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_197 2 2 0.000252525
Cannabis sativa NC_044379.1 2 CH_cansat_112 3 5 0.0000000646747
Helianthus annuus HanXRQChr03 2 CH_han_683 2 2 0.000579643
Helianthus annuus HanXRQChr13 2 CH_han_684 2 2 0.000579643
Quercus lobata 9 2 CH_qlo_416 3 4 0.000000159926
Salvia bowleyana GWHASIU00000002 2 CH_sbo_374 2 2 0.000272988
Simmondsia chinensis GWHAASQ00000015 2 CH_sci_216 2 2 0.000255428
Solanum tuberosum ST4.03ch07 2 CH_stu_560 2 2 0.000512453

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001