Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr6 | 1 | CH_acertr_578 | 3 | 35 | 0.000972287 |
| Capsicum annuum | PGAv.1.6.scaffold1352 | 1 | CH_can_209 | 3 | 12 | 0.00000900284 |
| Corylus avellana | 1 | 1 | CH_cav_220 | 3 | 12 | 0.0000678023 |
| Acer truncatum | chr6 | 2 | CH_acertr_578 | 3 | 35 | 0.000972287 |
| Capsicum annuum | PGAv.1.6.scaffold1352 | 2 | CH_can_209 | 3 | 12 | 0.00000900284 |
| Corylus avellana | 1 | 2 | CH_cav_220 | 3 | 12 | 0.0000678023 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 17.3.1.2.1 | Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component RNPS1 | 1 |
| 17.3.1.2.2 | Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component SRm160 | 10 |
| 17.3.1.2.3 | Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component PYM | 8 |
| 17.3.1.2.4 | Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component ACINUS | 30 |
| 17.3.1.2.5 | Protein biosynthesis.mRNA quality control.Exon Junction complex (EJC).peripheral components.component PININ | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |