Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.aminoacyl-tRNA synthetase activities.aspartate-tRNA ligase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold786 1 CH_can_359 2 2 0.000247831
Chenopodium quinoa C_Quinoa_Scaffold_1352 1 CH_cqu_564 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_2187 1 CH_cqu_565 2 2 0.000710732
Quercus lobata 12 1 CH_qlo_580 3 13 0.0000114281
Quercus lobata 11 1 CH_qlo_982 2 2 0.000516289
Rhododendron simsii chr07 1 CH_rsi_589 2 2 0.000967961
Sequoiadendron giganteum chr7 1 CH_sgi_490 3 3 0.0000000355983
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_384 2 2 0.000557543
Vanilla planifolia CM028154.1 1 CH_vpl_334 2 2 0.000443328
Capsicum annuum PGAv.1.6.scaffold786 2 CH_can_359 2 2 0.000247831
Chenopodium quinoa C_Quinoa_Scaffold_1352 2 CH_cqu_564 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_2187 2 CH_cqu_565 2 2 0.000710732
Quercus lobata 12 2 CH_qlo_580 3 13 0.0000114281
Quercus lobata 11 2 CH_qlo_982 2 2 0.000516289
Rhododendron simsii chr07 2 CH_rsi_589 2 2 0.000967961
Sequoiadendron giganteum chr7 2 CH_sgi_490 3 3 0.0000000355983
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_384 2 2 0.000557543
Vanilla planifolia CM028154.1 2 CH_vpl_334 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001