Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear export.export factor (Dim2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_251 2 3 0.000757523
Brassica carinata ChrB02 1 CH_bca_684 2 2 0.000128259
Cannabis sativa NC_044373.1 1 CH_cansat_284 2 2 0.000196993
Chenopodium quinoa C_Quinoa_Scaffold_3086 1 CH_cqu_526 2 2 0.000710732
Erythranthe guttata scaffold_11 1 CH_egut_275 2 2 0.0000728147
Glycine max Gm18 1 CH_gma_365 2 2 0.000113867
Magnolia biondii Chr10 1 CH_mbi_498 2 4 0.000291382
Sechium edule LG03 1 CH_sed_79 3 3 0.0000000763478
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_251 2 3 0.000757523
Brassica carinata ChrB02 2 CH_bca_684 2 2 0.000128259
Cannabis sativa NC_044373.1 2 CH_cansat_284 2 2 0.000196993
Chenopodium quinoa C_Quinoa_Scaffold_3086 2 CH_cqu_526 2 2 0.000710732
Erythranthe guttata scaffold_11 2 CH_egut_275 2 2 0.0000728147
Glycine max Gm18 2 CH_gma_365 2 2 0.000113867
Magnolia biondii Chr10 2 CH_mbi_498 2 4 0.000291382
Sechium edule LG03 2 CH_sed_79 3 3 0.0000000763478

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001