Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear export.export factor (Ltv1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold851 1 CH_can_313 2 3 0.000247821
Quercus lobata CM012294 1 CH_qlo_641 2 2 0.0000516289
Rhododendron simsii chr06 1 CH_rsi_521 2 3 0.000580745
Sapria himalayana scaffold66_2751028 1 CH_shi_67 2 2 0.0000571804
Zea mays 9 1 CH_zma_216 2 2 0.000306788
Capsicum annuum PGAv.1.6.scaffold851 2 CH_can_313 2 3 0.000247821
Quercus lobata CM012294 2 CH_qlo_641 2 2 0.0000516289
Rhododendron simsii chr06 2 CH_rsi_521 2 3 0.000580745
Sapria himalayana scaffold66_2751028 2 CH_shi_67 2 2 0.0000571804
Zea mays 9 2 CH_zma_216 2 2 0.000306788

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001