Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (RRP5)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Ceratophyllum demersum | 1 | 1 | CH_cde_79 | 2 | 2 | 0.0000789796 |
Carya illinoinensis | Chr08 | 1 | CH_cil_463 | 2 | 4 | 0.000371874 |
Chenopodium quinoa | C_Quinoa_Scaffold_1263 | 1 | CH_cqu_346 | 2 | 2 | 0.000142146 |
Malus domestica | Chr14 | 1 | CH_mdo_211 | 3 | 6 | 0.000000172548 |
Oryza sativa ssp. japonica | chr07 | 1 | CH_osa_199 | 2 | 2 | 0.0000528123 |
Quercus lobata | 7 | 1 | CH_qlo_640 | 2 | 2 | 0.0000516289 |
Salix brachista | GWHAAZH00000016 | 1 | CH_sbr_212 | 2 | 2 | 0.000063014 |
Sequoiadendron giganteum | chr7 | 1 | CH_sgi_215 | 4 | 4 | 0.000000000000346852 |
Selenicereus undatus | Scaffold_33673 | 1 | CH_sun_231 | 2 | 2 | 0.000435983 |
Zea mays | 7 | 1 | CH_zma_245 | 2 | 5 | 0.000511274 |
Ceratophyllum demersum | 1 | 2 | CH_cde_79 | 2 | 2 | 0.0000789796 |
Carya illinoinensis | Chr08 | 2 | CH_cil_463 | 2 | 4 | 0.000371874 |
Chenopodium quinoa | C_Quinoa_Scaffold_1263 | 2 | CH_cqu_346 | 2 | 2 | 0.000142146 |
Malus domestica | Chr14 | 2 | CH_mdo_211 | 3 | 6 | 0.000000172548 |
Oryza sativa ssp. japonica | chr07 | 2 | CH_osa_199 | 2 | 2 | 0.0000528123 |
Quercus lobata | 7 | 2 | CH_qlo_640 | 2 | 2 | 0.0000516289 |
Salix brachista | GWHAAZH00000016 | 2 | CH_sbr_212 | 2 | 2 | 0.000063014 |
Sequoiadendron giganteum | chr7 | 2 | CH_sgi_215 | 4 | 4 | 0.000000000000346852 |
Selenicereus undatus | Scaffold_33673 | 2 | CH_sun_231 | 2 | 2 | 0.000435983 |
Zea mays | 7 | 2 | CH_zma_245 | 2 | 5 | 0.000511274 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |