Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (RRP5)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 1 1 CH_cde_79 2 2 0.0000789796
Carya illinoinensis Chr08 1 CH_cil_463 2 4 0.000371874
Chenopodium quinoa C_Quinoa_Scaffold_1263 1 CH_cqu_346 2 2 0.000142146
Malus domestica Chr14 1 CH_mdo_211 3 6 0.000000172548
Oryza sativa ssp. japonica chr07 1 CH_osa_199 2 2 0.0000528123
Quercus lobata 7 1 CH_qlo_640 2 2 0.0000516289
Salix brachista GWHAAZH00000016 1 CH_sbr_212 2 2 0.000063014
Sequoiadendron giganteum chr7 1 CH_sgi_215 4 4 0.000000000000346852
Selenicereus undatus Scaffold_33673 1 CH_sun_231 2 2 0.000435983
Zea mays 7 1 CH_zma_245 2 5 0.000511274
Ceratophyllum demersum 1 2 CH_cde_79 2 2 0.0000789796
Carya illinoinensis Chr08 2 CH_cil_463 2 4 0.000371874
Chenopodium quinoa C_Quinoa_Scaffold_1263 2 CH_cqu_346 2 2 0.000142146
Malus domestica Chr14 2 CH_mdo_211 3 6 0.000000172548
Oryza sativa ssp. japonica chr07 2 CH_osa_199 2 2 0.0000528123
Quercus lobata 7 2 CH_qlo_640 2 2 0.0000516289
Salix brachista GWHAAZH00000016 2 CH_sbr_212 2 2 0.000063014
Sequoiadendron giganteum chr7 2 CH_sgi_215 4 4 0.000000000000346852
Selenicereus undatus Scaffold_33673 2 CH_sun_231 2 2 0.000435983
Zea mays 7 2 CH_zma_245 2 5 0.000511274

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001