Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.assembly factor (UTP2/NOP14)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus C02 1 CH_bna_524 2 3 0.000166961
Brassica oleracea C2 1 CH_bol_262 2 3 0.0000980568
Capsicum annuum PGAv.1.6.scaffold1021 1 CH_can_253 2 2 0.0000826105
Glycine max Gm18 1 CH_gma_421 2 2 0.000227734
Medicago truncatula chr1 1 CH_mtr_596 2 2 0.000123259
Nicotiana tabacum Nitab4.5_0000027 1 CH_nta_126 2 3 0.000329164
Rhododendron simsii chr10 1 CH_rsi_552 2 2 0.000645307
Sequoiadendron giganteum chr1 1 CH_sgi_510 3 3 0.0000000711967
Sequoiadendron giganteum chr1 1 CH_sgi_511 3 3 0.0000000711967
Trochodendron aralioides group7 1 CH_tar_113 3 3 0.0000000540676
Trochodendron aralioides group6 1 CH_tar_501 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_scaf_174 1 CH_tpr_280 2 3 0.000227083
Utricularia gibba unitig_62 1 CH_ugi_124 2 2 0.0000734592
Vanilla planifolia CM028154.1 1 CH_vpl_150 2 2 0.000073888
Brassica oleracea C2 2 CH_bol_262 2 3 0.0000980568
Capsicum annuum PGAv.1.6.scaffold1021 2 CH_can_253 2 2 0.0000826105
Glycine max Gm18 2 CH_gma_421 2 2 0.000227734
Nicotiana tabacum Nitab4.5_0000027 2 CH_nta_126 2 3 0.000329164
Rhododendron simsii chr10 2 CH_rsi_552 2 2 0.000645307
Sequoiadendron giganteum chr1 2 CH_sgi_510 3 3 0.0000000711967
Sequoiadendron giganteum chr1 2 CH_sgi_511 3 3 0.0000000711967
Trochodendron aralioides group7 2 CH_tar_113 3 3 0.0000000540676
Trochodendron aralioides group6 2 CH_tar_501 2 2 0.000600366
Trifolium pratense Tp57577_TGAC_v2_scaf_174 2 CH_tpr_280 2 3 0.000227083
Utricularia gibba unitig_62 2 CH_ugi_124 2 2 0.0000734592
Vanilla planifolia CM028154.1 2 CH_vpl_150 2 2 0.000073888

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001