Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU processome.pre-40S ribosomal subunit nuclear assembly.UtpB module.assembly factor (UTP6)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_18 4 13 0.00000000110858
Brassica carinata ChrB03 1 CH_bca_614 2 2 0.0000641293
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_162 2 2 0.0000827917
Hydrangea macrophylla Hma1.2p1_0412F.1 1 CH_hma_112 2 2 0.000111086
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_164 4 12 0.000000000470307
Simmondsia chinensis GWHAASQ00000005 1 CH_sci_137 2 2 0.0000851426
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_18 4 13 0.00000000110858
Brassica carinata ChrB03 2 CH_bca_614 2 2 0.0000641293
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_162 2 2 0.0000827917
Hydrangea macrophylla Hma1.2p1_0412F.1 2 CH_hma_112 2 2 0.000111086
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_164 4 12 0.000000000470307
Simmondsia chinensis GWHAASQ00000005 2 CH_sci_137 2 2 0.0000851426

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001