Functional clusters
Information
- Type MapMan
- Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS4
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr7 | 1 | CH_acertr_526 | 2 | 3 | 0.000634436 |
Camellia sinensis var. sinensis | Chr4 | 1 | CH_camsi_194 | 4 | 25 | 0.0000000036575 |
Capsicum annuum | PGAv.1.6.scaffold741 | 1 | CH_can_373 | 3 | 40 | 0.000403491 |
Manihot esculenta | Chromosome15 | 1 | CH_mes_411 | 2 | 2 | 0.000366379 |
Marchantia polymorpha | scaffold_12 | 1 | CH_mpo_73 | 2 | 2 | 0.000110442 |
Punica granatum | NC_045134.1 | 1 | CH_pgr_277 | 2 | 2 | 0.000225107 |
Sechium edule | LG13 | 1 | CH_sed_293 | 2 | 2 | 0.000428052 |
Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_407 | 2 | 2 | 0.000176082 |
Solanum pennellii | Spenn-ch02 | 1 | CH_spe_29 | 5 | 5 | 1.76154e-16 |
Acer truncatum | chr7 | 2 | CH_acertr_526 | 2 | 3 | 0.000634436 |
Camellia sinensis var. sinensis | Chr4 | 2 | CH_camsi_194 | 4 | 25 | 0.0000000036575 |
Capsicum annuum | PGAv.1.6.scaffold741 | 2 | CH_can_373 | 3 | 40 | 0.000403491 |
Manihot esculenta | Chromosome15 | 2 | CH_mes_411 | 2 | 2 | 0.000366379 |
Marchantia polymorpha | scaffold_12 | 2 | CH_mpo_73 | 2 | 2 | 0.000110442 |
Punica granatum | NC_045134.1 | 2 | CH_pgr_277 | 2 | 2 | 0.000225107 |
Sechium edule | LG13 | 2 | CH_sed_293 | 2 | 2 | 0.000428052 |
Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_407 | 2 | 2 | 0.000176082 |
Solanum pennellii | Spenn-ch02 | 2 | CH_spe_29 | 5 | 5 | 1.76154e-16 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |