Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS11

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ceratophyllum demersum 1 1 CH_cde_262 2 3 0.000710769
Glycine max Gm09 1 CH_gma_502 2 2 0.000379557
Magnolia biondii Chr16 1 CH_mbi_447 2 2 0.000145698
Malus domestica Chr02 1 CH_mdo_47 6 17 0.000000000000010079
Oryza sativa ssp. japonica chr07 1 CH_osa_384 2 2 0.000792184
Oryza sativa ssp. japonica chr04 1 CH_osa_385 2 2 0.000792184
Punica granatum NC_045134.1 1 CH_pgr_276 2 2 0.000225107
Phaseolus vulgaris Chr03 1 CH_pvu_401 2 2 0.000440836
Solanum lycopersicum SL4.0ch06 1 CH_sly_405 2 2 0.000176082
Solanum pennellii Spenn-ch06 1 CH_spe_355 2 2 0.000133437
Solanum tuberosum ST4.03ch06 1 CH_stu_163 3 4 0.0000000630246
Ceratophyllum demersum 1 2 CH_cde_262 2 3 0.000710769
Glycine max Gm09 2 CH_gma_502 2 2 0.000379557
Magnolia biondii Chr16 2 CH_mbi_447 2 2 0.000145698
Malus domestica Chr02 2 CH_mdo_47 6 17 0.000000000000010079
Oryza sativa ssp. japonica chr07 2 CH_osa_384 2 2 0.000792184
Oryza sativa ssp. japonica chr04 2 CH_osa_385 2 2 0.000792184
Punica granatum NC_045134.1 2 CH_pgr_276 2 2 0.000225107
Phaseolus vulgaris Chr03 2 CH_pvu_401 2 2 0.000440836
Solanum lycopersicum SL4.0ch06 2 CH_sly_405 2 2 0.000176082
Solanum pennellii Spenn-ch06 2 CH_spe_355 2 2 0.000133437
Solanum tuberosum ST4.03ch06 2 CH_stu_163 3 4 0.0000000630246

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001