Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL8

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC06 1 CH_bca_300 3 4 0.000000328987
Corylus avellana 5 1 CH_cav_347 2 2 0.000230008
Carya illinoinensis Chr07 1 CH_cil_423 2 2 0.000185948
Daucus carota DCARv2_Chr3 1 CH_dca_402 2 3 0.000573967
Lonicera japonica GWHAAZE00000008 1 CH_lonja_534 2 2 0.000359324
Malus domestica Chr10 1 CH_mdo_609 2 3 0.00034128
Physcomitrium patens Chr12 1 CH_ppa_323 2 2 0.000919089
Physcomitrium patens Chr04 1 CH_ppa_324 2 2 0.000919089
Populus trichocarpa Chr07 1 CH_ptr_365 2 2 0.0001734
Quercus lobata 6 1 CH_qlo_934 2 3 0.00046464
Salix brachista GWHAAZH00000007 1 CH_sbr_276 2 2 0.000189042
Brassica carinata ChrC06 2 CH_bca_300 3 4 0.000000328987
Corylus avellana 5 2 CH_cav_347 2 2 0.000230008
Carya illinoinensis Chr07 2 CH_cil_423 2 2 0.000185948
Daucus carota DCARv2_Chr3 2 CH_dca_402 2 3 0.000573967
Lonicera japonica GWHAAZE00000008 2 CH_lonja_534 2 2 0.000359324
Malus domestica Chr10 2 CH_mdo_609 2 3 0.00034128
Physcomitrium patens Chr12 2 CH_ppa_323 2 2 0.000919089
Physcomitrium patens Chr04 2 CH_ppa_324 2 2 0.000919089
Populus trichocarpa Chr07 2 CH_ptr_365 2 2 0.0001734
Quercus lobata 6 2 CH_qlo_934 2 3 0.00046464
Salix brachista GWHAAZH00000007 2 CH_sbr_276 2 2 0.000189042

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001