Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL18a

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr1 1 CH_ath_306 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00001 1 CH_atr_247 2 2 0.000238322
Papaver somniferum NC_039363.1 1 CH_pso_569 2 2 0.000337849
Papaver somniferum NC_039358.1 1 CH_pso_570 2 2 0.000337849
Populus trichocarpa Chr04 1 CH_ptr_428 2 2 0.000346801
Phaseolus vulgaris Chr06 1 CH_pvu_456 2 2 0.000734727
Solanum lycopersicum SL4.0ch02 1 CH_sly_515 2 2 0.000586941
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_362 2 2 0.000557543
Vitis vinifera chr10 1 CH_vvi_332 2 2 0.000228189
Arabidopsis thaliana Chr1 2 CH_ath_306 2 2 0.000171895
Amborella trichopoda AmTr_v1.0_scaffold00001 2 CH_atr_247 2 2 0.000238322
Papaver somniferum NC_039363.1 2 CH_pso_569 2 2 0.000337849
Papaver somniferum NC_039358.1 2 CH_pso_570 2 2 0.000337849
Populus trichocarpa Chr04 2 CH_ptr_428 2 2 0.000346801
Phaseolus vulgaris Chr06 2 CH_pvu_456 2 2 0.000734727
Solanum lycopersicum SL4.0ch02 2 CH_sly_515 2 2 0.000586941
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_362 2 2 0.000557543
Vitis vinifera chr10 2 CH_vvi_332 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001