Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL12

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_415 2 2 0.000211491
Camellia sinensis var. sinensis Chr10 1 CH_camsi_590 3 19 0.000106813
Camellia sinensis var. sinensis Chr11 1 CH_camsi_974 2 2 0.000962949
Cannabis sativa NC_044372.1 1 CH_cansat_285 2 2 0.000196993
Daucus carota DCARv2_Chr6 1 CH_dca_354 2 2 0.000382665
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_345 2 2 0.000134617
Magnolia biondii Chr10 1 CH_mbi_602 2 2 0.000485661
Nelumbo nucifera chr2 1 CH_nnu_400 2 2 0.000436015
Petunia axillaris Peaxi162Scf00270 1 CH_pax_245 2 2 0.000211067
Populus trichocarpa Chr18 1 CH_ptr_131 4 15 0.00000000395184
Salix brachista GWHAAZH00000018 1 CH_sbr_274 2 2 0.000189042
Sequoiadendron giganteum chr4 1 CH_sgi_816 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 1 CH_sly_152 3 3 0.000000103353
Solanum pennellii Spenn-ch04 1 CH_spe_61 5 24 0.0000000000697808
Trochodendron aralioides group1 1 CH_tar_510 2 2 0.000600366
Acer truncatum chr3 2 CH_acertr_415 2 2 0.000211491
Camellia sinensis var. sinensis Chr10 2 CH_camsi_590 3 19 0.000106813
Camellia sinensis var. sinensis Chr11 2 CH_camsi_974 2 2 0.000962949
Cannabis sativa NC_044372.1 2 CH_cansat_285 2 2 0.000196993
Daucus carota DCARv2_Chr6 2 CH_dca_354 2 2 0.000382665
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_345 2 2 0.000134617
Magnolia biondii Chr10 2 CH_mbi_602 2 2 0.000485661
Nelumbo nucifera chr2 2 CH_nnu_400 2 2 0.000436015
Petunia axillaris Peaxi162Scf00270 2 CH_pax_245 2 2 0.000211067
Populus trichocarpa Chr18 2 CH_ptr_131 4 15 0.00000000395184
Salix brachista GWHAAZH00000018 2 CH_sbr_274 2 2 0.000189042
Sequoiadendron giganteum chr4 2 CH_sgi_816 2 2 0.0000487151
Solanum lycopersicum SL4.0ch04 2 CH_sly_152 3 3 0.000000103353
Solanum pennellii Spenn-ch04 2 CH_spe_61 5 24 0.0000000000697808
Trochodendron aralioides group1 2 CH_tar_510 2 2 0.000600366

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001