Functional clusters

Information

  • Type MapMan
  • Description RNA processing.mRNA silencing.transacting siRNA pathway.ssRNA polymerase (RDR6)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00078 1 CH_atr_197 2 2 0.0000794407
Camellia sinensis var. sinensis Chr12 1 CH_camsi_548 2 2 0.0000458547
Fragaria x ananassa Fvb2-4 1 CH_fan_517 2 2 0.000388576
Fragaria x ananassa Fvb2-2 1 CH_fan_518 2 2 0.000388576
Fragaria x ananassa Fvb2-1 1 CH_fan_519 2 2 0.000388576
Fragaria vesca Fvb2 1 CH_fve_274 2 2 0.0000589102
Magnolia biondii Chr01 1 CH_mbi_342 2 2 0.0000485661
Simmondsia chinensis GWHAASQ00000023 1 CH_sci_165 2 2 0.0000851426
Sequoiadendron giganteum chr9 1 CH_sgi_1318 2 2 0.000487151
Tarenaya hassleriana NW_010963495.1 1 CH_tha_130 2 3 0.000209534
Amborella trichopoda AmTr_v1.0_scaffold00078 2 CH_atr_197 2 2 0.0000794407
Camellia sinensis var. sinensis Chr12 2 CH_camsi_548 2 2 0.0000458547
Eucalyptus grandis Chr03 2 CH_egr_756 2 3 0.000175577
Fragaria x ananassa Fvb2-4 2 CH_fan_517 2 2 0.000388576
Fragaria x ananassa Fvb2-2 2 CH_fan_518 2 2 0.000388576
Fragaria x ananassa Fvb2-1 2 CH_fan_519 2 2 0.000388576
Fragaria vesca Fvb2 2 CH_fve_274 2 2 0.0000589102
Magnolia biondii Chr01 2 CH_mbi_342 2 2 0.0000485661
Simmondsia chinensis GWHAASQ00000023 2 CH_sci_165 2 2 0.0000851426
Sequoiadendron giganteum chr9 2 CH_sgi_1318 2 2 0.000487151
Tarenaya hassleriana NW_010963495.1 2 CH_tha_130 2 3 0.000209534

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001