Functional clusters
Information
- Type MapMan
- Description RNA processing.mRNA silencing.transacting siRNA pathway
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Quercus lobata | CM012294 | 1 | CH_qlo_334 | 4 | 7 | 0.0000000071492 |
| Simmondsia chinensis | GWHAASQ00000008 | 1 | CH_sci_311 | 2 | 2 | 0.000851426 |
| Quercus lobata | CM012294 | 2 | CH_qlo_334 | 4 | 7 | 0.0000000071492 |
| Simmondsia chinensis | GWHAASQ00000008 | 2 | CH_sci_311 | 2 | 2 | 0.000851426 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 16.9.1.1 | RNA processing.mRNA silencing.transacting siRNA pathway.ssRNA polymerase (RDR6) | 21 |
| 16.9.1.2 | RNA processing.mRNA silencing.transacting siRNA pathway.regulatory protein (CLSY3/4) | 35 |
| 16.9.1.3 | RNA processing.mRNA silencing.transacting siRNA pathway.endoribonuclease (DCL4) | 4 |
| 16.9.1.4 | RNA processing.mRNA silencing.transacting siRNA pathway.DRB4-DRB7.1 dsRNA-binding regulator complex | 2 |
| 16.9.1.4.1 | RNA processing.mRNA silencing.transacting siRNA pathway.DRB4-DRB7.1 dsRNA-binding regulator complex.component DRB4 | 4 |
| 16.9.1.4.2 | RNA processing.mRNA silencing.transacting siRNA pathway.DRB4-DRB7.1 dsRNA-binding regulator complex.component DRB7 | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |