Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Brr2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_551 2 2 0.00070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_690 2 2 0.000628705
Amborella trichopoda AmTr_v1.0_scaffold00077 1 CH_atr_291 2 2 0.000476644
Camellia sinensis var. sinensis Chr6 1 CH_camsi_338 3 4 0.000000706432
Capsicum annuum PGAv.1.6.scaffold587 1 CH_can_395 2 2 0.000495663
Ceratophyllum demersum 4 1 CH_cde_271 2 2 0.000789796
Carica papaya supercontig_94 1 CH_cpa_109 3 9 0.00000455287
Chenopodium quinoa C_Quinoa_Scaffold_1516 1 CH_cqu_539 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_4087 1 CH_cqu_540 2 2 0.000710732
Lonicera japonica GWHAAZE00000005 1 CH_lonja_583 2 3 0.00053896
Vanilla planifolia CM028153.1 1 CH_vpl_316 2 2 0.000443328
Acer truncatum chr1 2 CH_acertr_551 2 2 0.00070497
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_690 2 2 0.000628705
Amborella trichopoda AmTr_v1.0_scaffold00077 2 CH_atr_291 2 2 0.000476644
Camellia sinensis var. sinensis Chr6 2 CH_camsi_338 3 4 0.000000706432
Capsicum annuum PGAv.1.6.scaffold587 2 CH_can_395 2 2 0.000495663
Ceratophyllum demersum 4 2 CH_cde_271 2 2 0.000789796
Carica papaya supercontig_94 2 CH_cpa_109 3 9 0.00000455287
Chenopodium quinoa C_Quinoa_Scaffold_1516 2 CH_cqu_539 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_4087 2 CH_cqu_540 2 2 0.000710732
Lonicera japonica GWHAAZE00000005 2 CH_lonja_583 2 3 0.00053896
Vanilla planifolia CM028153.1 2 CH_vpl_316 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001