Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (NSR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr7 1 CH_camsi_272 3 3 0.000000110392
Hydrangea macrophylla Hma1.2p1_0107F.1 1 CH_hma_396 2 2 0.000666519
Malus domestica Chr10 1 CH_mdo_746 2 2 0.000796344
Oryza sativa ssp. japonica chr09 1 CH_osa_320 2 2 0.000316874
Sequoiadendron giganteum chr4 1 CH_sgi_1315 2 2 0.000487151
Solanum lycopersicum SL4.0ch06 1 CH_sly_218 3 3 0.00000235128
Solanum lycopersicum SL4.0ch06 1 CH_sly_4 10 10 1.76139e-31
Solanum pennellii Spenn-ch06 1 CH_spe_19 6 6 3.29106e-19
Solanum tuberosum ST4.03ch06 1 CH_stu_227 3 5 0.000000787712
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_374 2 2 0.000454184
Camellia sinensis var. sinensis Chr7 2 CH_camsi_272 3 3 0.000000110392
Hydrangea macrophylla Hma1.2p1_0107F.1 2 CH_hma_396 2 2 0.000666519
Lotus japonicus chr2 2 CH_lja_413 2 2 0.000715077
Malus domestica Chr10 2 CH_mdo_746 2 2 0.000796344
Oryza sativa ssp. japonica chr09 2 CH_osa_320 2 2 0.000316874
Sequoiadendron giganteum chr4 2 CH_sgi_1315 2 2 0.000487151
Solanum lycopersicum SL4.0ch06 2 CH_sly_218 3 3 0.00000235128
Solanum lycopersicum SL4.0ch06 2 CH_sly_4 10 10 1.76139e-31
Solanum pennellii Spenn-ch06 2 CH_spe_19 6 6 3.29106e-19
Solanum tuberosum ST4.03ch06 2 CH_stu_227 3 5 0.000000787712
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_374 2 2 0.000454184

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001