Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica napus A09 1 CH_bna_305 3 5 0.00000234847
Chara braunii BFEA01000025 1 CH_cbr_25 3 5 0.0000000775994
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_336 2 2 0.000134617
Helianthus annuus HanXRQChr09 1 CH_han_674 2 2 0.000579643
Petunia axillaris Peaxi162Scf00515 1 CH_pax_340 2 2 0.000703556
Rhododendron simsii chr08 1 CH_rsi_481 2 2 0.000387184
Selaginella moellendorffii scaffold_42 1 CH_smo_113 2 2 0.000280112
Vanilla planifolia CM028155.1 1 CH_vpl_310 2 2 0.000443328
Chara braunii BFEA01000025 2 CH_cbr_25 3 5 0.0000000775994
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_336 2 2 0.000134617
Helianthus annuus HanXRQChr09 2 CH_han_674 2 2 0.000579643
Lotus japonicus chr3 2 CH_lja_308 2 2 0.000214523
Petunia axillaris Peaxi162Scf00515 2 CH_pax_340 2 2 0.000703556
Rhododendron simsii chr08 2 CH_rsi_481 2 2 0.000387184
Selaginella moellendorffii scaffold_42 2 CH_smo_113 2 2 0.000280112
Vanilla planifolia CM028155.1 2 CH_vpl_310 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001