Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40C)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00029 1 CH_atr_161 2 2 0.0000794407
Cicer arietinum L. Ca_LG1_v3 1 CH_car_140 2 2 0.0000778301
Malus domestica Chr13 1 CH_mdo_436 2 2 0.000113763
Nicotiana tabacum Nitab4.5_0000129 1 CH_nta_90 2 2 0.000109727
Quercus lobata 3 1 CH_qlo_746 2 3 0.000154883
Sequoiadendron giganteum chr10 1 CH_sgi_380 3 3 0.00000000355983
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_207 2 2 0.0000929238
Amborella trichopoda AmTr_v1.0_scaffold00029 2 CH_atr_161 2 2 0.0000794407
Cicer arietinum L. Ca_LG1_v3 2 CH_car_140 2 2 0.0000778301
Malus domestica Chr13 2 CH_mdo_436 2 2 0.000113763
Nicotiana tabacum Nitab4.5_0000129 2 CH_nta_90 2 2 0.000109727
Quercus lobata 3 2 CH_qlo_746 2 3 0.000154883
Sequoiadendron giganteum chr10 2 CH_sgi_380 3 3 0.00000000355983
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_207 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001