Functional clusters

Information

  • Type MapMan
  • Description RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).accessory protein activities.pre-mRNA-processing protein (PRP40A/B)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Capsicum annuum PGAv.1.6.scaffold134 1 CH_can_206 4 11 0.0000083004
Capsicum annuum PGAv.1.6.scaffold309 1 CH_can_56 8 55 0.0000000000152386
Capsicum annuum PGAv.1.6.scaffold1353 1 CH_can_58 7 28 0.0000000000192108
Citrus clementina scaffold_8 1 CH_ccl_366 2 3 0.000246083
Olea europaea chr5 1 CH_oeu_289 2 2 0.000320273
Quercus lobata 12 1 CH_qlo_639 2 2 0.0000516289
Sequoiadendron giganteum chr4 1 CH_sgi_1060 2 2 0.000146145
Zea mays 3 1 CH_zma_150 2 2 0.0000511313
Capsicum annuum PGAv.1.6.scaffold134 2 CH_can_206 4 11 0.0000083004
Capsicum annuum PGAv.1.6.scaffold309 2 CH_can_56 8 55 0.0000000000152386
Capsicum annuum PGAv.1.6.scaffold1353 2 CH_can_58 7 28 0.0000000000192108
Citrus clementina scaffold_8 2 CH_ccl_366 2 3 0.000246083
Olea europaea chr5 2 CH_oeu_289 2 2 0.000320273
Quercus lobata 12 2 CH_qlo_639 2 2 0.0000516289
Sequoiadendron giganteum chr4 2 CH_sgi_1060 2 2 0.000146145
Zea mays 3 2 CH_zma_150 2 2 0.0000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001