Functional clusters

Information

  • Type MapMan
  • Description RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.RNA helicase (PMH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_346 2 4 0.000396
Arabidopsis thaliana Chr3 1 CH_ath_253 2 3 0.0000859463
Cardamine hirsuta Chr3 1 CH_chi_278 2 3 0.000207354
Capsella rubella scaffold_3 1 CH_cru_303 2 3 0.000219338
Eutrema salsugineum scaffold_13 1 CH_esa_220 2 3 0.000228441
Fragaria x ananassa Fvb6-2 1 CH_fan_460 2 2 0.000277554
Fragaria x ananassa Fvb6-3 1 CH_fan_606 2 3 0.000832634
Olea europaea scaffold732 1 CH_oeu_346 2 3 0.000480389
Papaver somniferum NC_039358.1 1 CH_pso_566 2 2 0.000337849
Rhododendron simsii chr04 1 CH_rsi_326 2 2 0.0000645307
Schrenkiella parvula ch3-1 1 CH_spa_202 2 3 0.000236193
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_206 2 2 0.0000929238
Arabidopsis lyrata scaffold_3 2 CH_aly_346 2 4 0.000396
Arabidopsis thaliana Chr3 2 CH_ath_253 2 3 0.0000859463
Cardamine hirsuta Chr3 2 CH_chi_278 2 3 0.000207354
Capsella rubella scaffold_3 2 CH_cru_303 2 3 0.000219338
Eutrema salsugineum scaffold_13 2 CH_esa_220 2 3 0.000228441
Fragaria x ananassa Fvb6-2 2 CH_fan_460 2 2 0.000277554
Fragaria x ananassa Fvb6-3 2 CH_fan_606 2 3 0.000832634
Olea europaea scaffold732 2 CH_oeu_346 2 3 0.000480389
Papaver somniferum NC_039358.1 2 CH_pso_566 2 2 0.000337849
Rhododendron simsii chr04 2 CH_rsi_326 2 2 0.0000645307
Schrenkiella parvula ch3-1 2 CH_spa_202 2 3 0.000236193
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_206 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001