Functional clusters
Information
- Type MapMan
- Description Cell cycle organisation.cytokinesis.endoplasmic reticulum (ER) reorganisation.ER tubulae formation factor (RHD3/RL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_362 | 4 | 38 | 0.00000592123 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_376 | 4 | 42 | 0.00000897387 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_342 | 2 | 2 | 0.000393985 |
| Coffea canephora | chr0 | 1 | CH_ccan_111 | 3 | 15 | 0.00000217838 |
| Coffea canephora | chr9 | 1 | CH_ccan_75 | 3 | 6 | 0.0000000598545 |
| Ceratophyllum demersum | 4 | 1 | CH_cde_52 | 3 | 5 | 0.00000187093 |
| Cucumis melo | chr05 | 1 | CH_cme_135 | 3 | 4 | 0.0000149484 |
| Durio zibethinus | NW_019167926.1 | 1 | CH_dzi_14 | 6 | 9 | 1.86741e-16 |
| Hydrangea macrophylla | Hma1.2p1_0496F.1 | 1 | CH_hma_355 | 2 | 2 | 0.000333259 |
| Lonicera japonica | GWHAAZE00000009 | 1 | CH_lonja_250 | 3 | 3 | 0.00000118358 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_90 | 6 | 24 | 0.0000000000021491 |
| Malus domestica | Chr00 | 1 | CH_mdo_528 | 3 | 10 | 0.000210876 |
| Malus domestica | Chr05 | 1 | CH_mdo_53 | 6 | 12 | 0.0000000000000302314 |
| Malus domestica | Chr00 | 1 | CH_mdo_770 | 3 | 16 | 0.000982719 |
| Nelumbo nucifera | chr5 | 1 | CH_nnu_439 | 2 | 2 | 0.000654022 |
| Prunus persica | Pp04 | 1 | CH_ppe_70 | 5 | 6 | 0.000000000000175581 |
| Populus trichocarpa | Chr12 | 1 | CH_ptr_10 | 12 | 16 | 1.86561e-35 |
| Quercus lobata | 5 | 1 | CH_qlo_815 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_222 | 4 | 10 | 0.000000013162 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_352 | 3 | 4 | 0.00000157316 |
| Salix brachista | GWHAAZH00000012 | 1 | CH_sbr_10 | 9 | 29 | 2.51824e-21 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_226 | 4 | 4 | 0.000000000000346852 |
| Selenicereus undatus | Scaffold_33675 | 1 | CH_sun_30 | 3 | 3 | 0.0000000316814 |
| Vanilla planifolia | CM028152.1 | 1 | CH_vpl_94 | 3 | 6 | 0.00000573008 |
| Vitis vinifera | chr10_random | 1 | CH_vvi_388 | 2 | 2 | 0.000456378 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_362 | 4 | 38 | 0.00000592123 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_376 | 4 | 42 | 0.00000897387 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_342 | 2 | 2 | 0.000393985 |
| Coffea canephora | chr0 | 2 | CH_ccan_111 | 3 | 15 | 0.00000217838 |
| Coffea canephora | chr9 | 2 | CH_ccan_75 | 3 | 6 | 0.0000000598545 |
| Ceratophyllum demersum | 4 | 2 | CH_cde_52 | 3 | 5 | 0.00000187093 |
| Cucumis melo | chr05 | 2 | CH_cme_135 | 3 | 4 | 0.0000149484 |
| Durio zibethinus | NW_019167926.1 | 2 | CH_dzi_14 | 6 | 9 | 1.86741e-16 |
| Hydrangea macrophylla | Hma1.2p1_0496F.1 | 2 | CH_hma_355 | 2 | 2 | 0.000333259 |
| Lonicera japonica | GWHAAZE00000009 | 2 | CH_lonja_250 | 3 | 3 | 0.00000118358 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_90 | 6 | 24 | 0.0000000000021491 |
| Malus domestica | Chr00 | 2 | CH_mdo_528 | 3 | 10 | 0.000210876 |
| Malus domestica | Chr05 | 2 | CH_mdo_53 | 6 | 12 | 0.0000000000000302314 |
| Malus domestica | Chr00 | 2 | CH_mdo_770 | 3 | 16 | 0.000982719 |
| Nelumbo nucifera | chr5 | 2 | CH_nnu_439 | 2 | 2 | 0.000654022 |
| Prunus persica | Pp04 | 2 | CH_ppe_70 | 5 | 6 | 0.000000000000175581 |
| Populus trichocarpa | Chr12 | 2 | CH_ptr_10 | 12 | 16 | 1.86561e-35 |
| Quercus lobata | 5 | 2 | CH_qlo_815 | 2 | 2 | 0.000154887 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_222 | 4 | 10 | 0.000000013162 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_352 | 3 | 4 | 0.00000157316 |
| Salix brachista | GWHAAZH00000012 | 2 | CH_sbr_10 | 9 | 29 | 2.51824e-21 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_226 | 4 | 4 | 0.000000000000346852 |
| Selenicereus undatus | Scaffold_33675 | 2 | CH_sun_30 | 3 | 3 | 0.0000000316814 |
| Vanilla planifolia | CM028152.1 | 2 | CH_vpl_94 | 3 | 6 | 0.00000573008 |
| Vitis vinifera | chr10_random | 2 | CH_vvi_388 | 2 | 2 | 0.000456378 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |