Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza sativa ssp. japonica chr04 1 CH_osa_163 4 4 0.00000759197
Oryza sativa ssp. japonica chr04 2 CH_osa_163 4 4 0.00000759197

Available child term results

Ontology identifier Description Number of clusters
13.3.1.1.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-C/SMC4 5
13.3.1.1.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-E2/SMC2 22
13.3.1.2.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-D2A 6
13.3.1.2.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-G 14
13.3.1.2.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-H 31
13.3.1.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex 2
13.3.1.3.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-D2B 15
13.3.1.3.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-G2 14
13.3.1.3.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-H2 10
13.3.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation 2
13.3.2.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.prospindle assembly factor (TPX2) 2
13.3.2.2.1.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).kinase component beta-AURORA 2
13.3.2.2.1.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).component INCENP/WYRD 31
13.3.2.2.1.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).component BORR 6
13.3.2.2.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.centromere maintenance factor (GIP) 8
13.3.2.2.4 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.CENH3-recruitment factor (KNL2/Mis18) 5
13.3.2.3.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.kinetochore assembly protein (CENP-C) 8
13.3.2.3.2.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component NDC80 11
13.3.2.3.2.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component NUF2 6
13.3.2.3.2.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component SPC25 2
13.3.2.3.2.4 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component MUN/SPC24 26
13.3.2.3.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.center kinetochore protein (Mis12) 6
13.3.2.4 Cell cycle organisation.mitosis and meiosis.chromosome segregation.microtubule destabilizing motor protein (Kinesin-13) 1
13.3.3.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination 2
13.3.3.1.1.1.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC1 2
13.3.3.1.1.1.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC4 22
13.3.3.1.1.1.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC5 6
13.3.3.1.1.2.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.arc lamp subcomplex.component APC3 4
13.3.3.1.1.2.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.arc lamp subcomplex.component APC6 6
13.3.3.1.1.2.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.arc lamp subcomplex.component APC7 4
13.3.3.1.1.2.4 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.arc lamp subcomplex.component APC8 2
13.3.3.1.1.3.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.scaffold component APC2 4
13.3.3.1.1.3.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.component APC10 2
13.3.3.1.1.3.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.component APC11 2
13.3.3.1.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.E2 ubiquitin-conjugating protein 2
13.3.3.1.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.activator protein (FZR) 6
13.3.3.1.4 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.activator protein (CDC20) 27
13.3.3.1.5 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.regulatory protein (OSD1/UVI4) 24
13.3.4.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC1/TTN8 15
13.3.4.1.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC3/TTN7 30
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1 4
13.3.4.1.4 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.meiotic-specific Kleisin-type component SYN1 11
13.3.4.1.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SCC3 4
13.3.4.2.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC2) 12
13.3.4.2.1.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC4) 16
13.3.4.2.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.adherin-recruiting kinase (CDC7) 6
13.3.4.3.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (WAPL) 22
13.3.4.3.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (PDS5) 30
13.3.4.3.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.N-acetyltransferase cohesin cofactor (CTF7) 2
13.3.4.4.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin dissociation.centromeric cohesion protection factor (PANS1) 2
13.3.4.4.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin dissociation.centromeric cohesion protection factor (SGO) 10
13.3.4.4.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin dissociation.separase (ESP1) 31
13.3.4.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery 2
13.3.4.5.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (BUB3) 2
13.3.4.5.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (MAD1) 8
13.3.4.5.4 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (MAD2) 4
13.3.4.5.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (MAD3/BUBR1) 2
13.3.4.5.6 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.mitotic checkpoint kinase (MPS1) 4
13.3.4.5.7 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (TANMEI) 20
13.3.5.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.meiotic synchrony regulator (FST) 2
13.3.5.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.regulatory protein (DYAD/SWI1) 16
13.3.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.transcription factor (MMD1/DUET) 6
13.3.5.1.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.homolog pairing factor (ASY1) 4
13.3.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.chromosome axis protein (ASY3) 16
13.3.5.1.6 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.chromosome axis protein (ASY4) 5
13.3.5.2.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component a/SPO11 4
13.3.5.2.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component b/MTOP6b 8
13.3.5.2.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.accessory component MIDGET 4
13.3.5.2.1.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.accessory component RHL1 2
13.3.5.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD1/MEI1) 18
13.3.5.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD2/MEI4) 14
13.3.5.2.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD3/PAIR1) 17
13.3.5.2.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (DFO) 5
13.3.5.3.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component MRE11 1
13.3.5.3.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component RAD50 20
13.3.5.3.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component NBS1 12
13.3.5.3.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.regulatory protein for RAD50 nuclear import (PHS1) 10
13.3.5.3.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.ssDNA endonuclease (COM1/SAE2) 16
13.3.5.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.recombinase (DMC1) 4
13.3.5.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.DMC1-recruitment protein (BRCA2) 12
13.3.5.4.3.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RAD51c-XRCC3 accessory DSB repair heterodimer.component RAD51C 2
13.3.5.4.3.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RAD51c-XRCC3 accessory DSB repair heterodimer.component XRCC3 4
13.3.5.4.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1 14
13.3.5.4.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA2 4
13.3.5.4.4.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA3 5
13.3.5.4.5.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.HOP2-MND1 presynaptic filament stabilization complex.component MND1 11
13.3.5.4.5.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.HOP2-MND1 presynaptic filament stabilization complex.component HOP2 4
13.3.5.5.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway 4
13.3.5.5.1.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH4 4
13.3.5.5.1.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5 8
13.3.5.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) 34
13.3.5.5.1.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.component PTD 6
13.3.5.5.1.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.endonuclease component SHOC1/ZIP2 8
13.3.5.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (SPO22/ZIP4) 6
13.3.5.5.1.6 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.double Holliday junction resolving protein (MLH3) 18
13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1) 4
13.3.5.5.1.9 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (BVF1) 2
13.3.5.5.2.1.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component MUS81 22
13.3.5.5.2.1.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component EME1 4
13.3.5.5.2.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.endonuclease (FAN1) 14
13.3.5.5.2.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.meiotic crossover formation factor (FANCD2) 2
13.3.5.5.2.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.crosslink repair helicase (HRQ1) 10
13.3.5.5.2.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.Holliday junction resolvase (SEND1) 3
13.3.5.5.3.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.non-catalytic component RMI1 3
13.3.5.5.3.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.non-catalytic accessory component RMI2 4
13.3.5.5.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.DNA translocase component FANCM 8
13.3.5.5.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.component MHF1 6
13.3.5.5.4.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.component MHF2 4
13.3.5.5.5.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FIGL1-FLIP meiotic crossover regulator complex.ATPase component FIGL1 7
13.3.5.5.5.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FIGL1-FLIP meiotic crossover regulator complex.component FLIP 5
13.3.5.6.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic exit.meiotic exit regulator (MS5/TDM1) 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001