Functional clusters
Information
- Type MapMan
- Description Chromatin organisation.chromatin structure
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Chlamydomonas reinhardtii | chromosome_6 | 1 | CH_cre_1 | 27 | 66 | 2.74317e-37 |
| Prasinoderma coloniale | Chr9 | 1 | CH_pco_1 | 4 | 6 | 0.00000133284 |
| Prasinoderma coloniale | Chr9 | 1 | CH_pco_4 | 3 | 3 | 0.0000531852 |
| Papaver somniferum | NW_020648415.1 | 1 | CH_pso_643 | 6 | 49 | 0.000551407 |
| Papaver somniferum | NW_020622934.1 | 1 | CH_pso_687 | 5 | 25 | 0.000796518 |
| Populus trichocarpa | Chr07 | 1 | CH_ptr_280 | 5 | 19 | 0.0000243024 |
| Chlamydomonas reinhardtii | chromosome_6 | 2 | CH_cre_1 | 27 | 66 | 2.74317e-37 |
| Prasinoderma coloniale | Chr9 | 2 | CH_pco_1 | 4 | 6 | 0.00000133284 |
| Prasinoderma coloniale | Chr9 | 2 | CH_pco_4 | 3 | 3 | 0.0000531852 |
| Papaver somniferum | NW_020648415.1 | 2 | CH_pso_643 | 6 | 49 | 0.000551407 |
| Papaver somniferum | NW_020622934.1 | 2 | CH_pso_687 | 5 | 25 | 0.000796518 |
| Populus trichocarpa | Chr07 | 2 | CH_ptr_280 | 5 | 19 | 0.0000243024 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 12.1.1 | Chromatin organisation.chromatin structure.DNA wrapping | 158 |
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) | 61 |
| 12.1.1.2 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2B) | 92 |
| 12.1.1.3 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H3) | 73 |
| 12.1.1.4 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H4) | 63 |
| 12.1.2.1 | Chromatin organisation.chromatin structure.DNA bridging.linker histone (H1) | 15 |
| 12.1.3.1 | Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B) | 6 |
| 12.1.4.1 | Chromatin organisation.chromatin structure.structure modulation.regulatory factor (DEK) | 16 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |