Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.salicylic acid.conjugation and degradation.salicylic acid 3-hydroxylase (DLO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-9 1 CH_aar_50 4 15 0.00000000310846
Arabidopsis lyrata scaffold_6 1 CH_aly_236 2 2 0.0000660044
Arabidopsis thaliana Chr4 1 CH_ath_367 2 6 0.000429713
Brassica carinata ChrC04 1 CH_bca_865 2 2 0.000320646
Brassica oleracea C9 1 CH_bol_305 2 2 0.000196117
Brassica oleracea C3 1 CH_bol_401 2 3 0.000588328
Brassica rapa A03 1 CH_bra_233 2 2 0.000128794
Cardamine hirsuta Chr8 1 CH_chi_242 2 2 0.0000691204
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_273 2 2 0.0000448722
Eutrema salsugineum scaffold_3 1 CH_esa_227 2 3 0.000228441
Helianthus annuus HanXRQChr03 1 CH_han_581 2 2 0.000231857
Lonicera japonica GWHAAZE00000002 1 CH_lonja_387 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_436 2 4 0.000308388
Malus domestica Chr14 1 CH_mdo_118 4 9 0.000000000309133
Papaver somniferum NC_039361.1 1 CH_pso_437 2 2 0.0000675699
Populus trichocarpa Chr01 1 CH_ptr_441 2 2 0.000346801
Schrenkiella parvula ch6-2 1 CH_spa_207 2 3 0.000236193
Tripterygium wilfordii NC_052251.1 1 CH_twi_219 2 2 0.000167252
Vitis vinifera chr2 1 CH_vvi_344 2 2 0.000228189
Aethionema arabicum LG-9 2 CH_aar_50 4 15 0.00000000310846
Arabidopsis lyrata scaffold_6 2 CH_aly_236 2 2 0.0000660044
Arabidopsis thaliana Chr4 2 CH_ath_367 2 6 0.000429713
Brassica carinata ChrC04 2 CH_bca_865 2 2 0.000320646
Brassica oleracea C9 2 CH_bol_305 2 2 0.000196117
Brassica oleracea C3 2 CH_bol_401 2 3 0.000588328
Brassica rapa A03 2 CH_bra_233 2 2 0.000128794
Cardamine hirsuta Chr8 2 CH_chi_242 2 2 0.0000691204
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_273 2 2 0.0000448722
Eucalyptus grandis Chr04 2 CH_egr_626 3 32 0.0000254646
Eutrema salsugineum scaffold_3 2 CH_esa_227 2 3 0.000228441
Helianthus annuus HanXRQChr03 2 CH_han_581 2 2 0.000231857
Lonicera japonica GWHAAZE00000002 2 CH_lonja_387 2 2 0.0000598874
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_436 2 4 0.000308388
Malus domestica Chr14 2 CH_mdo_118 4 9 0.000000000309133
Papaver somniferum NC_039361.1 2 CH_pso_437 2 2 0.0000675699
Populus trichocarpa Chr01 2 CH_ptr_441 2 2 0.000346801
Schrenkiella parvula ch6-2 2 CH_spa_207 2 3 0.000236193
Tripterygium wilfordii NC_052251.1 2 CH_twi_219 2 2 0.000167252
Vitis vinifera chr2 2 CH_vvi_344 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001