Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.salicylic acid.conjugation and degradation.UDP-dependent glycosyl transferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_4 1 CH_aly_235 2 2 0.0000660044
Arabidopsis thaliana Chr2 1 CH_ath_260 2 4 0.0000859463
Brassica carinata ChrC01 1 CH_bca_1166 2 2 0.000961939
Brassica carinata ChrC02 1 CH_bca_1167 2 2 0.000961939
Brassica carinata ChrB02 1 CH_bca_1168 2 2 0.000961939
Brassica carinata ChrB01 1 CH_bca_232 3 3 0.0000000822522
Brassica napus C03 1 CH_bna_323 3 9 0.00000364149
Brassica napus A03 1 CH_bna_62 4 5 0.0000000000120668
Brassica oleracea C4 1 CH_bol_353 2 2 0.000326861
Brassica oleracea C3 1 CH_bol_95 3 4 0.0000000641015
Brassica rapa A05 1 CH_bra_323 2 2 0.000429314
Brassica rapa A03 1 CH_bra_75 3 3 0.0000000276471
Camellia sinensis var. sinensis Chr5 1 CH_camsi_494 3 38 0.0000265863
Corylus avellana 9 1 CH_cav_361 2 3 0.000230008
Citrus clementina scaffold_3 1 CH_ccl_319 2 2 0.0000820311
Cardamine hirsuta Chr4 1 CH_chi_89 3 3 0.0000000071667
Capsella rubella scaffold_4 1 CH_cru_95 3 3 0.0000000080191
Erythranthe guttata scaffold_7 1 CH_egut_174 3 7 0.000000278323
Eutrema salsugineum scaffold_22 1 CH_esa_179 2 2 0.0000761499
Gossypium hirsutum D02 1 CH_ghi_181 3 3 0.0000000042779
Gossypium raimondii Chr05 1 CH_gra_101 3 3 0.00000000431127
Malus domestica Chr15 1 CH_mdo_618 2 3 0.00034128
Manihot esculenta Chromosome05 1 CH_mes_369 2 2 0.000183189
Olea europaea chr22 1 CH_oeu_419 2 4 0.000960734
Quercus lobata CM012294 1 CH_qlo_283 4 7 0.00000000101125
Quercus lobata 10 1 CH_qlo_295 4 8 0.00000000202228
Rhododendron simsii chr02 1 CH_rsi_21 8 12 7.26974e-25
Schrenkiella parvula ch4-6 1 CH_spa_175 2 2 0.000078734
Tripterygium wilfordii NC_052247.1 1 CH_twi_179 2 2 0.0000557507
Arabidopsis lyrata scaffold_4 2 CH_aly_235 2 2 0.0000660044
Arabidopsis thaliana Chr2 2 CH_ath_260 2 4 0.0000859463
Brassica carinata ChrC01 2 CH_bca_1166 2 2 0.000961939
Brassica carinata ChrC02 2 CH_bca_1167 2 2 0.000961939
Brassica carinata ChrB02 2 CH_bca_1168 2 2 0.000961939
Brassica carinata ChrB01 2 CH_bca_232 3 3 0.0000000822522
Brassica oleracea C4 2 CH_bol_353 2 2 0.000326861
Brassica oleracea C3 2 CH_bol_95 3 4 0.0000000641015
Brassica rapa A05 2 CH_bra_323 2 2 0.000429314
Brassica rapa A03 2 CH_bra_75 3 3 0.0000000276471
Camellia sinensis var. sinensis Chr5 2 CH_camsi_494 3 38 0.0000265863
Corylus avellana 9 2 CH_cav_361 2 3 0.000230008
Citrus clementina scaffold_3 2 CH_ccl_319 2 2 0.0000820311
Cardamine hirsuta Chr4 2 CH_chi_89 3 3 0.0000000071667
Capsella rubella scaffold_4 2 CH_cru_95 3 3 0.0000000080191
Erythranthe guttata scaffold_7 2 CH_egut_174 3 7 0.000000278323
Eutrema salsugineum scaffold_22 2 CH_esa_179 2 2 0.0000761499
Gossypium hirsutum D02 2 CH_ghi_181 3 3 0.0000000042779
Gossypium raimondii Chr05 2 CH_gra_101 3 3 0.00000000431127
Malus domestica Chr15 2 CH_mdo_618 2 3 0.00034128
Manihot esculenta Chromosome05 2 CH_mes_369 2 2 0.000183189
Olea europaea chr22 2 CH_oeu_419 2 4 0.000960734
Quercus lobata CM012294 2 CH_qlo_283 4 7 0.00000000101125
Quercus lobata 10 2 CH_qlo_295 4 8 0.00000000202228
Rhododendron simsii chr02 2 CH_rsi_21 8 12 7.26974e-25
Schrenkiella parvula ch4-6 2 CH_spa_175 2 2 0.000078734
Tripterygium wilfordii NC_052247.1 2 CH_twi_179 2 2 0.0000557507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001