Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.jasmonic acid.biosynthesis.OPC-8:CoA synthetase (ACS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_320 2 2 0.000070497
Arabidopsis lyrata scaffold_1 1 CH_aly_36 4 4 0.00000000000431373
Arabidopsis thaliana Chr1 1 CH_ath_105 3 4 0.0000000196984
Amborella trichopoda AmTr_v1.0_scaffold00001 1 CH_atr_280 2 4 0.000476607
Brassica carinata ChrB03 1 CH_bca_997 2 2 0.00059854
Brassica napus A08 1 CH_bna_70 4 5 0.0000000000474041
Brassica oleracea C8 1 CH_bol_105 3 4 0.000000128201
Brassica rapa A08 1 CH_bra_47 4 5 0.000000000083081
Cardamine hirsuta Chr1 1 CH_chi_24 5 6 0.00000000000000102734
Capsella rubella scaffold_1 1 CH_cru_50 4 4 0.00000000000586363
Eutrema salsugineum scaffold_5 1 CH_esa_46 4 7 0.0000000000463657
Pisum sativum chr6LG2 1 CH_psa_288 2 2 0.00015649
Rhododendron simsii chr06 1 CH_rsi_350 2 2 0.0000645307
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_152 5 5 8.87156e-16
Schrenkiella parvula ch1-1 1 CH_spa_72 3 4 0.0000000371942
Solanum pennellii Spenn-ch12 1 CH_spe_290 2 2 0.000044479
Selenicereus undatus Scaffold_19641 1 CH_sun_182 2 4 0.000217984
Theobroma cacao Chromosome_8 1 CH_tca_290 2 2 0.0000732386
Tarenaya hassleriana NW_010965372.1 1 CH_tha_181 2 2 0.000419082
Tripterygium wilfordii NC_052242.1 1 CH_twi_204 2 3 0.000167247
Acer truncatum chr13 2 CH_acertr_320 2 2 0.000070497
Arabidopsis lyrata scaffold_1 2 CH_aly_36 4 4 0.00000000000431373
Arabidopsis thaliana Chr1 2 CH_ath_105 3 4 0.0000000196984
Amborella trichopoda AmTr_v1.0_scaffold00001 2 CH_atr_280 2 4 0.000476607
Brassica carinata ChrB03 2 CH_bca_997 2 2 0.00059854
Brassica oleracea C8 2 CH_bol_105 3 4 0.000000128201
Brassica rapa A08 2 CH_bra_47 4 5 0.000000000083081
Cardamine hirsuta Chr1 2 CH_chi_24 5 6 0.00000000000000102734
Capsella rubella scaffold_1 2 CH_cru_50 4 4 0.00000000000586363
Eutrema salsugineum scaffold_5 2 CH_esa_46 4 7 0.0000000000463657
Pisum sativum chr6LG2 2 CH_psa_288 2 2 0.00015649
Rhododendron simsii chr06 2 CH_rsi_350 2 2 0.0000645307
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_152 5 5 8.87156e-16
Schrenkiella parvula ch1-1 2 CH_spa_72 3 4 0.0000000371942
Solanum pennellii Spenn-ch12 2 CH_spe_290 2 2 0.000044479
Selenicereus undatus Scaffold_19641 2 CH_sun_182 2 4 0.000217984
Theobroma cacao Chromosome_8 2 CH_tca_290 2 2 0.0000732386
Tarenaya hassleriana NW_010965372.1 2 CH_tha_181 2 2 0.000419082
Tripterygium wilfordii NC_052242.1 2 CH_twi_204 2 3 0.000167247

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001