Functional clusters
Information
- Type MapMan
- Description Phytohormone action.gibberellin.biosynthesis.ent-kaurene synthase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC08 | 1 | CH_bca_609 | 2 | 3 | 0.0000641286 |
| Camellia sinensis var. sinensis | Chr7 | 1 | CH_camsi_177 | 4 | 21 | 0.00000000173061 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_236 | 2 | 2 | 0.0000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_150 | 3 | 9 | 0.000000253675 |
| Fragaria x ananassa | Fvb3-3 | 1 | CH_fan_302 | 3 | 16 | 0.0000160967 |
| Fragaria vesca | Fvb3 | 1 | CH_fve_271 | 2 | 2 | 0.0000589102 |
| Helianthus annuus | HanXRQChr16 | 1 | CH_han_471 | 3 | 41 | 0.0000953888 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_638 | 2 | 2 | 0.000898311 |
| Malus domestica | Chr10 | 1 | CH_mdo_212 | 3 | 6 | 0.000000172548 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_106 | 4 | 6 | 0.000000000358564 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_126 | 3 | 3 | 0.00000035144 |
| Populus trichocarpa | Chr08 | 1 | CH_ptr_310 | 2 | 2 | 0.0000578001 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_384 | 3 | 21 | 0.00000316946 |
| Solanum pennellii | Spenn-ch08 | 1 | CH_spe_527 | 2 | 4 | 0.000800563 |
| Tripterygium wilfordii | NC_052252.1 | 1 | CH_twi_87 | 3 | 5 | 0.0000000466208 |
| Zea mays | 2 | 1 | CH_zma_63 | 3 | 3 | 0.0000000392171 |
| Brassica carinata | ChrC08 | 2 | CH_bca_609 | 2 | 3 | 0.0000641286 |
| Camellia sinensis var. sinensis | Chr7 | 2 | CH_camsi_177 | 4 | 21 | 0.00000000173061 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_236 | 2 | 2 | 0.0000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_150 | 3 | 9 | 0.000000253675 |
| Fragaria x ananassa | Fvb3-3 | 2 | CH_fan_302 | 3 | 16 | 0.0000160967 |
| Fragaria vesca | Fvb3 | 2 | CH_fve_271 | 2 | 2 | 0.0000589102 |
| Helianthus annuus | HanXRQChr16 | 2 | CH_han_471 | 3 | 41 | 0.0000953888 |
| Lotus japonicus | chr3 | 2 | CH_lja_271 | 2 | 2 | 0.0000715077 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_638 | 2 | 2 | 0.000898311 |
| Malus domestica | Chr10 | 2 | CH_mdo_212 | 3 | 6 | 0.000000172548 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_106 | 4 | 6 | 0.000000000358564 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_126 | 3 | 3 | 0.00000035144 |
| Populus trichocarpa | Chr08 | 2 | CH_ptr_310 | 2 | 2 | 0.0000578001 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_384 | 3 | 21 | 0.00000316946 |
| Solanum pennellii | Spenn-ch08 | 2 | CH_spe_527 | 2 | 4 | 0.000800563 |
| Tripterygium wilfordii | NC_052252.1 | 2 | CH_twi_87 | 3 | 5 | 0.0000000466208 |
| Zea mays | 2 | 2 | CH_zma_63 | 3 | 3 | 0.0000000392171 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |