Functional clusters
Information
- Type MapMan
- Description Phytohormone action.ethylene.biosynthesis.1-aminocyclopropane-1-carboxylate (ACC) oxidase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 1 | CH_arhy_142 | 4 | 4 | 0.0000000000805856 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 1 | CH_arhy_450 | 3 | 11 | 0.0000806598 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_591 | 3 | 12 | 0.000114327 |
| Carpinus fangiana | Cfa06 | 1 | CH_cfa_391 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_47 | 6 | 6 | 3.53339e-17 |
| Eucalyptus grandis | Chr11 | 1 | CH_egr_43 | 9 | 11 | 2.15002e-26 |
| Gossypium hirsutum | A07 | 1 | CH_ghi_335 | 3 | 3 | 0.00000164699 |
| Glycine max | Gm14 | 1 | CH_gma_283 | 3 | 5 | 0.0000120966 |
| Glycine max | Gm02 | 1 | CH_gma_284 | 3 | 5 | 0.0000120966 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 1 | CH_lsa_197 | 3 | 3 | 0.000000221936 |
| Olea europaea | chr21 | 1 | CH_oeu_14 | 5 | 8 | 0.000000000000190925 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_216 | 3 | 5 | 0.00000679928 |
| Quercus lobata | 8 | 1 | CH_qlo_508 | 3 | 5 | 0.00000139916 |
| Striga asiatica | scaffold28 | 1 | CH_sas_114 | 2 | 2 | 0.000375223 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_354 | 3 | 26 | 0.000161194 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_141 | 6 | 6 | 1.67529e-16 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_26 | 11 | 17 | 2.74436e-30 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_177 | 3 | 4 | 0.000000664682 |
| Trochodendron aralioides | group14 | 1 | CH_tar_557 | 2 | 2 | 0.000900549 |
| Vanilla planifolia | CM028150.1 | 1 | CH_vpl_17 | 5 | 9 | 0.00000000000709402 |
| Vanilla planifolia | CM028151.1 | 1 | CH_vpl_68 | 3 | 3 | 0.000000982735 |
| Zea mays | 10 | 1 | CH_zma_99 | 3 | 6 | 0.00000156829 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.17 | 2 | CH_arhy_142 | 4 | 4 | 0.0000000000805856 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.07 | 2 | CH_arhy_450 | 3 | 11 | 0.0000806598 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_591 | 3 | 12 | 0.000114327 |
| Carpinus fangiana | Cfa06 | 2 | CH_cfa_391 | 2 | 2 | 0.000757346 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_47 | 6 | 6 | 3.53339e-17 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_43 | 9 | 11 | 2.15002e-26 |
| Gossypium hirsutum | A07 | 2 | CH_ghi_335 | 3 | 3 | 0.00000164699 |
| Glycine max | Gm14 | 2 | CH_gma_283 | 3 | 5 | 0.0000120966 |
| Glycine max | Gm02 | 2 | CH_gma_284 | 3 | 5 | 0.0000120966 |
| Lactuca sativa | Lsat_1_v8_lg_6 | 2 | CH_lsa_197 | 3 | 3 | 0.000000221936 |
| Olea europaea | chr21 | 2 | CH_oeu_14 | 5 | 8 | 0.000000000000190925 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_216 | 3 | 5 | 0.00000679928 |
| Quercus lobata | 8 | 2 | CH_qlo_508 | 3 | 5 | 0.00000139916 |
| Striga asiatica | scaffold28 | 2 | CH_sas_114 | 2 | 2 | 0.000375223 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_354 | 3 | 26 | 0.000161194 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_141 | 6 | 6 | 1.67529e-16 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_26 | 11 | 17 | 2.74436e-30 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_177 | 3 | 4 | 0.000000664682 |
| Trochodendron aralioides | group14 | 2 | CH_tar_557 | 2 | 2 | 0.000900549 |
| Vanilla planifolia | CM028150.1 | 2 | CH_vpl_17 | 5 | 9 | 0.00000000000709402 |
| Vanilla planifolia | CM028151.1 | 2 | CH_vpl_68 | 3 | 3 | 0.000000982735 |
| Zea mays | 10 | 2 | CH_zma_99 | 3 | 6 | 0.00000156829 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |