Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.cytokinin.conjugation and degradation.UDP-dependent glycosyl transferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_25048_HRSCAF_25167 1 CH_ama_2 5 5 0.00000000000000870684
Aquilegia oxysepala CHR01 1 CH_aox_325 2 3 0.000721742
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_18 6 14 0.00000000000000183943
Camellia sinensis var. sinensis Chr10 1 CH_camsi_3 13 16 1.75312e-40
Cannabis sativa NC_044372.1 1 CH_cansat_4 12 36 1.30202e-29
Corylus avellana 10 1 CH_cav_400 2 4 0.000459982
Citrus clementina scaffold_9 1 CH_ccl_315 2 2 0.0000820311
Carya illinoinensis Chr10 1 CH_cil_403 2 3 0.000185943
Citrullus lanatus CG_Chr04 1 CH_cla_46 3 5 0.000000118041
Cucumis melo chr08 1 CH_cme_119 3 14 0.00000242909
Chenopodium quinoa C_Quinoa_Scaffold_3792 1 CH_cqu_6 14 35 1.15526e-32
Chenopodium quinoa C_Quinoa_Scaffold_2876 1 CH_cqu_7 12 17 2.02842e-31
Cucumis sativus L. chr4 1 CH_csa_116 3 6 0.00000020903
Daucus carota DCARv2_Chr5 1 CH_dca_15 6 6 6.4438e-16
Durio zibethinus NW_019167937.1 1 CH_dzi_191 2 2 0.0000463489
Eucalyptus grandis Chr01 1 CH_egr_29 10 18 2.7507e-29
Erythranthe guttata scaffold_10 1 CH_egut_50 5 6 0.000000000000318788
Erythranthe guttata scaffold_11 1 CH_egut_82 4 4 0.000000000243245
Helianthus annuus HanXRQChr01 1 CH_han_144 5 18 0.000000000184082
Hydrangea macrophylla Hma1.2p1_0110F.1 1 CH_hma_56 3 5 0.000000185093
Lupinus albus Lalb_Chr06 1 CH_lal_311 2 2 0.000314895
Lotus japonicus chr1 1 CH_lja_12 6 6 1.17831e-18
Lonicera japonica GWHAAZE00000005 1 CH_lonja_244 4 15 0.000000877902
Lonicera japonica GWHAAZE00000021 1 CH_lonja_629 3 15 0.000888064
Lonicera japonica GWHAAZE00000001 1 CH_lonja_66 7 30 0.0000000000000252702
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_57 5 6 0.000000000000145121
Nelumbo nucifera chr7 1 CH_nnu_88 3 4 0.0000000456254
Nicotiana tabacum Nitab4.5_0000082 1 CH_nta_68 3 5 0.000010109
Olea europaea scaffold1753 1 CH_oeu_12 5 6 0.0000000000000460342
Olea europaea chr17 1 CH_oeu_75 3 3 0.000000359022
Oryza sativa ssp. japonica chr04 1 CH_osa_62 5 63 0.00000000245406
Petunia axillaris Peaxi162Scf00062 1 CH_pax_226 3 5 0.000170568
Petunia axillaris Peaxi162Scf00130 1 CH_pax_6 8 9 2.61684e-20
Papaver somniferum NC_039368.1 1 CH_pso_653 2 2 0.000630652
Phaseolus vulgaris Chr07 1 CH_pvu_62 4 4 0.00000000001785
Quercus lobata 7 1 CH_qlo_767 2 3 0.000154883
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_556 2 3 0.000119593
Rhododendron simsii chr04 1 CH_rsi_57 6 22 0.0000000000000525434
Salvia bowleyana GWHASIU00000002 1 CH_sbo_4 15 62 1.86809e-35
Simmondsia chinensis GWHAASQ00000025 1 CH_sci_163 2 2 0.0000851426
Sequoiadendron giganteum chr1 1 CH_sgi_1237 2 2 0.000292291
Solanum lycopersicum SL4.0ch04 1 CH_sly_144 4 5 0.0000000322155
Solanum lycopersicum SL4.0ch12 1 CH_sly_284 3 4 0.0000418166
Solanum pennellii Spenn-ch12 1 CH_spe_110 4 4 0.00000000540556
Solanum pennellii Spenn-ch04 1 CH_spe_48 6 11 0.000000000000680425
Solanum tuberosum ST4.03ch04 1 CH_stu_101 6 18 0.000000000404066
Solanum tuberosum ST4.03ch11 1 CH_stu_350 3 3 0.0000332312
Solanum tuberosum ST4.03ch04 1 CH_stu_36 8 15 9.15909e-17
Trochodendron aralioides group7 1 CH_tar_4 8 16 1.02594e-22
Theobroma cacao Chromosome_5 1 CH_tca_288 2 2 0.0000732386
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_7 6 6 1.09174e-18
Vigna mungo CM024071.1 1 CH_vmu_13 5 5 1.30754e-16
Vanilla planifolia CM028151.1 1 CH_vpl_46 3 4 0.000000131023
Avicennia marina ScioBoG_25048_HRSCAF_25167 2 CH_ama_2 5 5 0.00000000000000870684
Aquilegia oxysepala CHR01 2 CH_aox_325 2 3 0.000721742
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_18 6 14 0.00000000000000183943
Camellia sinensis var. sinensis Chr10 2 CH_camsi_3 13 16 1.75312e-40
Cannabis sativa NC_044372.1 2 CH_cansat_4 12 36 1.30202e-29
Corylus avellana 10 2 CH_cav_400 2 4 0.000459982
Citrus clementina scaffold_9 2 CH_ccl_315 2 2 0.0000820311
Carya illinoinensis Chr10 2 CH_cil_403 2 3 0.000185943
Citrullus lanatus CG_Chr04 2 CH_cla_46 3 5 0.000000118041
Cucumis melo chr08 2 CH_cme_119 3 14 0.00000242909
Chenopodium quinoa C_Quinoa_Scaffold_3792 2 CH_cqu_6 14 35 1.15526e-32
Chenopodium quinoa C_Quinoa_Scaffold_2876 2 CH_cqu_7 12 17 2.02842e-31
Cucumis sativus L. chr4 2 CH_csa_116 3 6 0.00000020903
Daucus carota DCARv2_Chr5 2 CH_dca_15 6 6 6.4438e-16
Durio zibethinus NW_019167937.1 2 CH_dzi_191 2 2 0.0000463489
Eucalyptus grandis Chr01 2 CH_egr_29 10 18 2.7507e-29
Erythranthe guttata scaffold_10 2 CH_egut_50 5 6 0.000000000000318788
Erythranthe guttata scaffold_11 2 CH_egut_82 4 4 0.000000000243245
Helianthus annuus HanXRQChr01 2 CH_han_144 5 18 0.000000000184082
Hydrangea macrophylla Hma1.2p1_0110F.1 2 CH_hma_56 3 5 0.000000185093
Lupinus albus Lalb_Chr06 2 CH_lal_311 2 2 0.000314895
Lotus japonicus chr1 2 CH_lja_12 6 6 1.17831e-18
Lonicera japonica GWHAAZE00000005 2 CH_lonja_244 4 15 0.000000877902
Lonicera japonica GWHAAZE00000021 2 CH_lonja_629 3 15 0.000888064
Lonicera japonica GWHAAZE00000001 2 CH_lonja_66 7 30 0.0000000000000252702
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_57 5 6 0.000000000000145121
Nelumbo nucifera chr7 2 CH_nnu_88 3 4 0.0000000456254
Nicotiana tabacum Nitab4.5_0000082 2 CH_nta_68 3 5 0.000010109
Olea europaea scaffold1753 2 CH_oeu_12 5 6 0.0000000000000460342
Olea europaea chr17 2 CH_oeu_75 3 3 0.000000359022
Oryza sativa ssp. japonica chr04 2 CH_osa_62 5 63 0.00000000245406
Petunia axillaris Peaxi162Scf00062 2 CH_pax_226 3 5 0.000170568
Petunia axillaris Peaxi162Scf00130 2 CH_pax_6 8 9 2.61684e-20
Papaver somniferum NC_039368.1 2 CH_pso_653 2 2 0.000630652
Phaseolus vulgaris Chr07 2 CH_pvu_62 4 4 0.00000000001785
Quercus lobata 7 2 CH_qlo_767 2 3 0.000154883
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_556 2 3 0.000119593
Rhododendron simsii chr04 2 CH_rsi_57 6 22 0.0000000000000525434
Salvia bowleyana GWHASIU00000002 2 CH_sbo_4 15 62 1.86809e-35
Simmondsia chinensis GWHAASQ00000025 2 CH_sci_163 2 2 0.0000851426
Sequoiadendron giganteum chr1 2 CH_sgi_1237 2 2 0.000292291
Solanum lycopersicum SL4.0ch04 2 CH_sly_144 4 5 0.0000000322155
Solanum lycopersicum SL4.0ch12 2 CH_sly_284 3 4 0.0000418166
Solanum pennellii Spenn-ch12 2 CH_spe_110 4 4 0.00000000540556
Solanum pennellii Spenn-ch04 2 CH_spe_48 6 11 0.000000000000680425
Solanum tuberosum ST4.03ch04 2 CH_stu_101 6 18 0.000000000404066
Solanum tuberosum ST4.03ch11 2 CH_stu_350 3 3 0.0000332312
Solanum tuberosum ST4.03ch04 2 CH_stu_36 8 15 9.15909e-17
Trochodendron aralioides group7 2 CH_tar_4 8 16 1.02594e-22
Theobroma cacao Chromosome_5 2 CH_tca_288 2 2 0.0000732386
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_7 6 6 1.09174e-18
Vigna mungo CM024071.1 2 CH_vmu_13 5 5 1.30754e-16
Vanilla planifolia CM028151.1 2 CH_vpl_46 3 4 0.000000131023

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001