Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.auxin.biosynthesis.indole-3-acetamide (IAM) pathway.indole-3-acetamide hydrolase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr6 1 CH_camsi_924 2 3 0.000825341
Citrus clementina scaffold_5 1 CH_ccl_284 2 2 0.0000820311
Carpinus fangiana Cfa02 1 CH_cfa_219 2 2 0.0000757346
Carya illinoinensis Chr07 1 CH_cil_396 2 3 0.000185943
Capsella rubella scaffold_1 1 CH_cru_251 2 2 0.0000731154
Cucumis sativus L. chr1 1 CH_csa_198 2 2 0.0000834759
Davidia involucrata GWHABJS00000006 1 CH_din_457 2 5 0.000500088
Durio zibethinus NW_019168004.1 1 CH_dzi_59 4 15 0.00000000203785
Gossypium raimondii Chr07 1 CH_gra_281 2 3 0.000160828
Malus domestica Chr12 1 CH_mdo_215 3 4 0.000000172554
Oryza sativa ssp. japonica chr04 1 CH_osa_201 2 2 0.0000528123
Punica granatum NC_045133.1 1 CH_pgr_257 2 3 0.000225098
Quercus lobata 3 1 CH_qlo_222 5 41 0.0000000000399111
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_285 3 9 0.000000200224
Theobroma cacao Chromosome_5 1 CH_tca_280 2 2 0.0000732386
Camellia sinensis var. sinensis Chr6 2 CH_camsi_924 2 3 0.000825341
Citrus clementina scaffold_5 2 CH_ccl_284 2 2 0.0000820311
Carpinus fangiana Cfa02 2 CH_cfa_219 2 2 0.0000757346
Carya illinoinensis Chr07 2 CH_cil_396 2 3 0.000185943
Capsella rubella scaffold_1 2 CH_cru_251 2 2 0.0000731154
Cucumis sativus L. chr1 2 CH_csa_198 2 2 0.0000834759
Davidia involucrata GWHABJS00000006 2 CH_din_457 2 5 0.000500088
Durio zibethinus NW_019168004.1 2 CH_dzi_59 4 15 0.00000000203785
Gossypium hirsutum D11 2 CH_ghi_539 2 2 0.000160209
Gossypium hirsutum A11 2 CH_ghi_751 2 3 0.000480613
Gossypium raimondii Chr07 2 CH_gra_281 2 3 0.000160828
Malus domestica Chr12 2 CH_mdo_215 3 4 0.000000172554
Oryza sativa ssp. japonica chr04 2 CH_osa_201 2 2 0.0000528123
Punica granatum NC_045133.1 2 CH_pgr_257 2 3 0.000225098
Quercus lobata 3 2 CH_qlo_222 5 41 0.0000000000399111
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_285 3 9 0.000000200224
Theobroma cacao Chromosome_5 2 CH_tca_280 2 2 0.0000732386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001