Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.tryptophan aminotransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 1 CH_aox_67 4 21 0.0000000462572
Brassica carinata ChrC05 1 CH_bca_915 2 2 0.000448905
Brassica oleracea C5 1 CH_bol_339 2 2 0.000326861
Cucumis melo chr02 1 CH_cme_225 2 2 0.000200133
Durio zibethinus NW_019168270.1 1 CH_dzi_378 2 3 0.000834235
Fragaria vesca Fvb5 1 CH_fve_335 2 2 0.00017673
Lotus japonicus chr2 1 CH_lja_110 3 3 0.0000000767031
Nelumbo nucifera chr4 1 CH_nnu_359 2 2 0.000261609
Olea europaea chr11 1 CH_oeu_368 2 2 0.000533789
Punica granatum NC_045132.1 1 CH_pgr_124 3 5 0.000000337789
Prunus persica Pp01 1 CH_ppe_401 2 2 0.000223789
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_570 2 2 0.000119596
Rhododendron simsii chr12 1 CH_rsi_485 2 2 0.000387184
Trochodendron aralioides group8 1 CH_tar_506 2 2 0.000600366
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_68 4 6 0.000000000541553
Aquilegia oxysepala CHR03 2 CH_aox_67 4 21 0.0000000462572
Brassica carinata ChrC05 2 CH_bca_915 2 2 0.000448905
Brassica oleracea C5 2 CH_bol_339 2 2 0.000326861
Cucumis melo chr02 2 CH_cme_225 2 2 0.000200133
Durio zibethinus NW_019168270.1 2 CH_dzi_378 2 3 0.000834235
Fragaria vesca Fvb5 2 CH_fve_335 2 2 0.00017673
Gossypium hirsutum A04 2 CH_ghi_813 2 2 0.000747644
Gossypium hirsutum D04 2 CH_ghi_814 2 2 0.000747644
Lotus japonicus chr2 2 CH_lja_110 3 3 0.0000000767031
Nelumbo nucifera chr4 2 CH_nnu_359 2 2 0.000261609
Olea europaea chr11 2 CH_oeu_368 2 2 0.000533789
Punica granatum NC_045132.1 2 CH_pgr_124 3 5 0.000000337789
Prunus persica Pp01 2 CH_ppe_401 2 2 0.000223789
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_570 2 2 0.000119596
Rhododendron simsii chr12 2 CH_rsi_485 2 2 0.000387184
Trochodendron aralioides group8 2 CH_tar_506 2 2 0.000600366
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_68 4 6 0.000000000541553

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001