Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.auxin

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_1 1 CH_aly_433 6 59 0.000744129
Arabidopsis thaliana Chr1 1 CH_ath_396 4 19 0.00057241
Brassica oleracea C8 1 CH_bol_375 5 27 0.00043229
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_31 8 13 0.0000000000000252028
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_489 4 13 0.000718332
Eutrema salsugineum scaffold_5 1 CH_esa_296 6 52 0.000488322
Helianthus annuus HanXRQChr10 1 CH_han_360 5 10 0.00000902393
Medicago truncatula chr5 1 CH_mtr_79 11 50 0.00000000000000517504
Arabidopsis lyrata scaffold_1 2 CH_aly_433 6 59 0.000744129
Arabidopsis thaliana Chr1 2 CH_ath_396 4 19 0.00057241
Brassica oleracea C8 2 CH_bol_375 5 27 0.00043229
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_31 8 13 0.0000000000000252028
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_489 4 13 0.000718332
Eutrema salsugineum scaffold_5 2 CH_esa_296 6 52 0.000488322
Helianthus annuus HanXRQChr10 2 CH_han_360 5 10 0.00000902393
Lotus japonicus chr1 2 CH_lja_294 4 7 0.00018194

Available child term results

Ontology identifier Description Number of clusters
11.2.1 Phytohormone action.auxin.biosynthesis 1
11.2.1.1.1 Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.tryptophan aminotransferase 32
11.2.1.1.2 Phytohormone action.auxin.biosynthesis.indole-3-pyruvic acid (IPyA) pathway.flavin-dependent monooxygenase (YUCCA) 47
11.2.1.2.1 Phytohormone action.auxin.biosynthesis.indole-3-acetamide (IAM) pathway.indole-3-acetamide hydrolase 32
11.2.2 Phytohormone action.auxin.perception and signal transduction 2
11.2.2.1 Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB) 14
11.2.2.2 Phytohormone action.auxin.perception and signal transduction.transcriptional repressor (IAA/AUX) 24
11.2.2.3 Phytohormone action.auxin.perception and signal transduction.transcriptional co-repressor (TPL/TPR) 2
11.2.3.1 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid-amido synthetase 20
11.2.3.2 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid carboxyl methyltransferase (MES17) 16
11.2.3.3 Phytohormone action.auxin.conjugation and degradation.SAM dependent carboxyl methyltransferase (IAMT1) 4
11.2.3.4 Phytohormone action.auxin.conjugation and degradation.indole-3-acetic acid dioxygenase 73
11.2.4.1.1 Phytohormone action.auxin.transport.polar auxin transport.auxin transporter (PIN) 41
11.2.4.1.2 Phytohormone action.auxin.transport.polar auxin transport.regulatory kinase (PINOID) 4
11.2.4.1.3 Phytohormone action.auxin.transport.polar auxin transport.regulatory protein (BIG) 27
11.2.4.3 Phytohormone action.auxin.transport.auxin efflux transporter (ABCB19) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001