Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.EC1-peptide activity.EC1-precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_4 1 CH_aly_407 2 2 0.000660044
Arabidopsis thaliana Chr2 1 CH_ath_340 2 2 0.000286492
Corylus avellana 8 1 CH_cav_477 2 2 0.000766695
Carpinus fangiana Cfa01 1 CH_cfa_40 4 4 0.00000000000651664
Carya illinoinensis Chr04 1 CH_cil_194 3 3 0.0000000230519
Carica papaya supercontig_49 1 CH_cpa_291 2 2 0.000285198
Capsella rubella scaffold_4 1 CH_cru_164 3 4 0.000000641451
Daucus carota DCARv2_Chr1 1 CH_dca_49 4 6 0.0000000000583684
Erythranthe guttata scaffold_3 1 CH_egut_461 2 2 0.000728147
Eutrema salsugineum scaffold_15 1 CH_esa_318 2 2 0.000761499
Fragaria x ananassa Fvb2-1 1 CH_fan_531 3 17 0.00046361
Fragaria vesca Fvb2 1 CH_fve_443 3 24 0.00058831
Helianthus annuus HanXRQChr02 1 CH_han_679 2 2 0.000579643
Lupinus albus Lalb_Chr08 1 CH_lal_160 3 34 0.0000247041
Lonicera japonica GWHAAZE00000002 1 CH_lonja_184 4 24 0.000000034201
Manihot esculenta Chromosome12 1 CH_mes_349 2 2 0.000183189
Papaver somniferum NC_039361.1 1 CH_pso_680 3 17 0.000686637
Populus trichocarpa Chr01 1 CH_ptr_485 2 2 0.000578001
Quercus lobata 10 1 CH_qlo_229 4 4 0.000000000052024
Quercus lobata 6 1 CH_qlo_449 3 3 0.000000335867
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_755 2 2 0.000597979
Rhododendron simsii chr10 1 CH_rsi_423 2 2 0.000193592
Salvia bowleyana GWHASIU00000005 1 CH_sbo_330 2 2 0.000136494
Salix brachista GWHAAZH00000003 1 CH_sbr_25 6 11 0.00000000000000476898
Sechium edule LG11 1 CH_sed_70 3 3 0.0000000305391
Schrenkiella parvula ch4-1 1 CH_spa_284 2 2 0.00078734
Trochodendron aralioides group11 1 CH_tar_109 4 17 0.0000000540104
Tarenaya hassleriana NW_010965372.1 1 CH_tha_136 2 2 0.000209541
Tripterygium wilfordii NC_052238.1 1 CH_twi_242 2 2 0.000334504
Arabidopsis lyrata scaffold_4 2 CH_aly_407 2 2 0.000660044
Arabidopsis thaliana Chr2 2 CH_ath_340 2 2 0.000286492
Corylus avellana 8 2 CH_cav_477 2 2 0.000766695
Carpinus fangiana Cfa01 2 CH_cfa_40 4 4 0.00000000000651664
Carya illinoinensis Chr04 2 CH_cil_194 3 3 0.0000000230519
Carica papaya supercontig_49 2 CH_cpa_291 2 2 0.000285198
Capsella rubella scaffold_4 2 CH_cru_164 3 4 0.000000641451
Daucus carota DCARv2_Chr1 2 CH_dca_49 4 6 0.0000000000583684
Erythranthe guttata scaffold_3 2 CH_egut_461 2 2 0.000728147
Eutrema salsugineum scaffold_15 2 CH_esa_318 2 2 0.000761499
Fragaria x ananassa Fvb2-1 2 CH_fan_531 3 17 0.00046361
Fragaria vesca Fvb2 2 CH_fve_443 3 24 0.00058831
Helianthus annuus HanXRQChr02 2 CH_han_679 2 2 0.000579643
Lupinus albus Lalb_Chr08 2 CH_lal_160 3 34 0.0000247041
Lonicera japonica GWHAAZE00000002 2 CH_lonja_184 4 24 0.000000034201
Manihot esculenta Chromosome12 2 CH_mes_349 2 2 0.000183189
Papaver somniferum NC_039361.1 2 CH_pso_680 3 17 0.000686637
Populus trichocarpa Chr01 2 CH_ptr_485 2 2 0.000578001
Quercus lobata 10 2 CH_qlo_229 4 4 0.000000000052024
Quercus lobata 6 2 CH_qlo_449 3 3 0.000000335867
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_755 2 2 0.000597979
Rhododendron simsii chr10 2 CH_rsi_423 2 2 0.000193592
Salvia bowleyana GWHASIU00000005 2 CH_sbo_330 2 2 0.000136494
Salix brachista GWHAAZH00000003 2 CH_sbr_25 6 11 0.00000000000000476898
Sechium edule LG11 2 CH_sed_70 3 3 0.0000000305391
Schrenkiella parvula ch4-1 2 CH_spa_284 2 2 0.00078734
Trochodendron aralioides group11 2 CH_tar_109 4 17 0.0000000540104
Tarenaya hassleriana NW_010965372.1 2 CH_tha_136 2 2 0.000209541
Tripterygium wilfordii NC_052238.1 2 CH_twi_242 2 2 0.000334504

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001