Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.receptor CrRLK1L chaperone (LLG)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_102840_HRSCAF_103099 1 CH_ama_140 2 2 0.000862218
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_263 2 2 0.00049675
Camellia sinensis var. sinensis Chr5 1 CH_camsi_818 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold623 1 CH_can_391 2 2 0.000495663
Cardamine hirsuta Chr8 1 CH_chi_125 3 3 0.000000143334
Cucumis melo chr01 1 CH_cme_224 2 2 0.000200133
Cucumis sativus L. chr7 1 CH_csa_251 2 2 0.000250428
Daucus carota DCARv2_Chr5 1 CH_dca_352 2 2 0.000382665
Eutrema salsugineum scaffold_16 1 CH_esa_92 3 3 0.000000304449
Glycine max Gm04 1 CH_gma_550 2 2 0.000569336
Glycine max Gm06 1 CH_gma_551 2 2 0.000569336
Helianthus annuus HanXRQChr11 1 CH_han_632 2 2 0.000386429
Lupinus albus Lalb_Chr03 1 CH_lal_399 2 2 0.000787236
Magnolia biondii Chr15 1 CH_mbi_442 2 2 0.000145698
Nelumbo nucifera chr6 1 CH_nnu_120 3 6 0.000000570258
Oryza sativa ssp. japonica chr04 1 CH_osa_381 2 2 0.000792184
Physcomitrium patens Chr04 1 CH_ppa_320 2 2 0.000919089
Papaver somniferum NC_039364.1 1 CH_pso_646 2 2 0.000630652
Papaver somniferum NC_039365.1 1 CH_pso_98 4 4 0.00000000000239955
Quercus lobata 8 1 CH_qlo_879 2 2 0.000309773
Sechium edule LG04 1 CH_sed_82 3 3 0.000000152696
Sequoiadendron giganteum chr7 1 CH_sgi_781 2 2 0.0000487151
Trifolium pratense Tp57577_TGAC_v2_scaf_193 1 CH_tpr_302 2 2 0.000227092
Vanilla planifolia CM028158.1 1 CH_vpl_313 2 2 0.000443328
Vanilla planifolia JADCNL010000082.1 1 CH_vpl_314 2 2 0.000443328
Avicennia marina ScioBoG_102840_HRSCAF_103099 2 CH_ama_140 2 2 0.000862218
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_263 2 2 0.00049675
Camellia sinensis var. sinensis Chr5 2 CH_camsi_818 2 2 0.000458547
Capsicum annuum PGAv.1.6.scaffold623 2 CH_can_391 2 2 0.000495663
Cardamine hirsuta Chr8 2 CH_chi_125 3 3 0.000000143334
Cucumis melo chr01 2 CH_cme_224 2 2 0.000200133
Cucumis sativus L. chr7 2 CH_csa_251 2 2 0.000250428
Daucus carota DCARv2_Chr5 2 CH_dca_352 2 2 0.000382665
Eutrema salsugineum scaffold_16 2 CH_esa_92 3 3 0.000000304449
Glycine max Gm04 2 CH_gma_550 2 2 0.000569336
Glycine max Gm06 2 CH_gma_551 2 2 0.000569336
Helianthus annuus HanXRQChr11 2 CH_han_632 2 2 0.000386429
Lupinus albus Lalb_Chr03 2 CH_lal_399 2 2 0.000787236
Magnolia biondii Chr15 2 CH_mbi_442 2 2 0.000145698
Nelumbo nucifera chr6 2 CH_nnu_120 3 6 0.000000570258
Oryza sativa ssp. japonica chr04 2 CH_osa_381 2 2 0.000792184
Physcomitrium patens Chr04 2 CH_ppa_320 2 2 0.000919089
Papaver somniferum NC_039364.1 2 CH_pso_646 2 2 0.000630652
Papaver somniferum NC_039365.1 2 CH_pso_98 4 4 0.00000000000239955
Quercus lobata 8 2 CH_qlo_879 2 2 0.000309773
Sechium edule LG04 2 CH_sed_82 3 3 0.000000152696
Sequoiadendron giganteum chr7 2 CH_sgi_781 2 2 0.0000487151
Trifolium pratense Tp57577_TGAC_v2_scaf_193 2 CH_tpr_302 2 2 0.000227092
Vanilla planifolia CM028158.1 2 CH_vpl_313 2 2 0.000443328
Vanilla planifolia JADCNL010000082.1 2 CH_vpl_314 2 2 0.000443328

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001