Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.CRP (cysteine-rich-peptide) category.RALF/RALFL-peptide activity.RALF-peptide receptor (CrRLK1L)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Beta vulgaris Chr2_EL10_PGA_scaffold6 1 CH_bvu_85 4 7 0.0000000425665
Camellia sinensis var. sinensis Chr12 1 CH_camsi_208 6 27 0.0000000124371
Cannabis sativa NC_044379.1 1 CH_cansat_44 5 5 0.000000000000863002
Capsicum annuum PGAv.1.6.scaffold497 1 CH_can_91 4 4 0.00000000819548
Corylus avellana 5 1 CH_cav_9 9 16 1.72622e-20
Corylus avellana 2 1 CH_cav_97 4 5 0.0000000854678
Citrus clementina scaffold_7 1 CH_ccl_258 3 4 0.0000329305
Cucumis melo chr07 1 CH_cme_256 3 8 0.000253727
Chenopodium quinoa C_Quinoa_Scaffold_3674 1 CH_cqu_59 5 7 0.0000000000208932
Cucumis sativus L. chr4 1 CH_csa_92 4 5 0.0000000338047
Daucus carota DCARv2_Chr7 1 CH_dca_266 4 49 0.000162956
Durio zibethinus NW_019167893.1 1 CH_dzi_3 12 18 4.79455e-28
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_191 4 6 0.00000128353
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_415 3 4 0.000299402
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_416 3 4 0.000299402
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_52 6 10 0.0000000000221218
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_54 7 23 0.0000000000275014
Eucalyptus grandis Chr10 1 CH_egr_117 8 13 1.32043e-17
Eucalyptus grandis Chr09 1 CH_egr_61 11 25 1.57434e-23
Fragaria x ananassa Fvb6-3 1 CH_fan_481 3 6 0.000284407
Fragaria vesca Fvb6 1 CH_fve_30 6 8 0.0000000000000242425
Gossypium hirsutum A07 1 CH_ghi_164 7 37 0.00000000129521
Glycine max Gm18 1 CH_gma_28 8 15 2.70497e-17
Glycine max Gm13 1 CH_gma_57 6 11 0.00000000000428341
Gossypium raimondii Chr01 1 CH_gra_144 6 41 0.000000228161
Gossypium raimondii Chr07 1 CH_gra_399 3 5 0.000494132
Helianthus annuus HanXRQChr09 1 CH_han_275 5 13 0.000000512432
Helianthus annuus HanXRQChr04 1 CH_han_344 5 20 0.00000612026
Lonicera japonica GWHAAZE00000003 1 CH_lonja_6 21 53 1.27089e-37
Lonicera japonica GWHAAZE00000006 1 CH_lonja_89 9 32 0.00000000000206553
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_16 12 30 2.39999e-21
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_172 6 21 0.0000000729284
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_427 3 3 0.000246492
Malus domestica Chr17 1 CH_mdo_38 8 34 0.00000000000000373809
Manihot esculenta Chromosome02 1 CH_mes_235 4 9 0.00000448907
Manihot esculenta Chromosome01 1 CH_mes_246 6 80 0.00000879062
Medicago truncatula chr5 1 CH_mtr_225 4 4 0.00000000965013
Medicago truncatula chr7 1 CH_mtr_29 10 21 1.08886e-22
Olea europaea chr18 1 CH_oeu_337 3 10 0.000348016
Punica granatum NC_045130.1 1 CH_pgr_40 6 11 0.00000000000184052
Physcomitrium patens Chr09 1 CH_ppa_35 3 4 0.00000022525
Prunus persica Pp06 1 CH_ppe_95 5 6 0.0000000000468695
Populus trichocarpa Chr17 1 CH_ptr_59 7 15 0.0000000000000382977
Phaseolus vulgaris Chr08 1 CH_pvu_204 4 8 0.00000298518
Quercus lobata 5 1 CH_qlo_406 7 57 0.000000126727
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_161 5 8 0.000000000399314
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_64 8 24 0.00000000000000111303
Sechium edule LG03 1 CH_sed_173 3 3 0.0000309972
Solanum pennellii Spenn-ch05 1 CH_spe_65 5 8 0.0000000000872482
Solanum tuberosum ST4.03ch05 1 CH_stu_56 7 19 0.0000000000000846145
Trochodendron aralioides group5 1 CH_tar_396 3 7 0.000290891
Theobroma cacao Chromosome_2 1 CH_tca_101 5 6 0.00000000124507
Theobroma cacao Chromosome_10 1 CH_tca_12 10 15 2.46327e-21
Theobroma cacao Chromosome_4 1 CH_tca_13 12 41 8.9472e-21
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_176 5 57 0.00000998177
Vigna mungo CM024077.1 1 CH_vmu_8 9 23 9.78375e-18
Vigna mungo CM024070.1 1 CH_vmu_93 5 16 0.000000114055
Vitis vinifera chr7 1 CH_vvi_107 4 7 0.00000000323332
Beta vulgaris Chr2_EL10_PGA_scaffold6 2 CH_bvu_85 4 7 0.0000000425665
Camellia sinensis var. sinensis Chr12 2 CH_camsi_208 6 27 0.0000000124371
Cannabis sativa NC_044379.1 2 CH_cansat_44 5 5 0.000000000000863002
Capsicum annuum PGAv.1.6.scaffold497 2 CH_can_91 4 4 0.00000000819548
Corylus avellana 5 2 CH_cav_9 9 16 1.72622e-20
Corylus avellana 2 2 CH_cav_97 4 5 0.0000000854678
Citrus clementina scaffold_7 2 CH_ccl_258 3 4 0.0000329305
Cucumis melo chr07 2 CH_cme_256 3 8 0.000253727
Chenopodium quinoa C_Quinoa_Scaffold_3674 2 CH_cqu_59 5 7 0.0000000000208932
Cucumis sativus L. chr4 2 CH_csa_92 4 5 0.0000000338047
Daucus carota DCARv2_Chr7 2 CH_dca_266 4 49 0.000162956
Durio zibethinus NW_019167893.1 2 CH_dzi_3 12 18 4.79455e-28
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_191 4 6 0.00000128353
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_415 3 4 0.000299402
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_416 3 4 0.000299402
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_52 6 10 0.0000000000221218
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_54 7 23 0.0000000000275014
Eucalyptus grandis Chr10 2 CH_egr_117 8 13 1.32043e-17
Eucalyptus grandis Chr09 2 CH_egr_61 11 25 1.57434e-23
Eucalyptus grandis Chr10 2 CH_egr_634 3 3 0.0000280348
Fragaria x ananassa Fvb6-3 2 CH_fan_481 3 6 0.000284407
Fragaria vesca Fvb6 2 CH_fve_30 6 8 0.0000000000000242425
Gossypium hirsutum A07 2 CH_ghi_164 7 37 0.00000000129521
Glycine max Gm18 2 CH_gma_28 8 15 2.70497e-17
Glycine max Gm13 2 CH_gma_57 6 11 0.00000000000428341
Gossypium raimondii Chr01 2 CH_gra_144 6 41 0.000000228161
Gossypium raimondii Chr07 2 CH_gra_399 3 5 0.000494132
Helianthus annuus HanXRQChr09 2 CH_han_275 5 13 0.000000512432
Helianthus annuus HanXRQChr04 2 CH_han_344 5 20 0.00000612026
Lonicera japonica GWHAAZE00000003 2 CH_lonja_6 21 53 1.27089e-37
Lonicera japonica GWHAAZE00000006 2 CH_lonja_89 9 32 0.00000000000206553
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_16 12 30 2.39999e-21
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_172 6 21 0.0000000729284
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_427 3 3 0.000246492
Malus domestica Chr17 2 CH_mdo_38 8 34 0.00000000000000373809
Manihot esculenta Chromosome02 2 CH_mes_235 4 9 0.00000448907
Manihot esculenta Chromosome01 2 CH_mes_246 6 80 0.00000879062
Olea europaea chr18 2 CH_oeu_337 3 10 0.000348016
Punica granatum NC_045130.1 2 CH_pgr_40 6 11 0.00000000000184052
Physcomitrium patens Chr09 2 CH_ppa_35 3 4 0.00000022525
Prunus persica Pp06 2 CH_ppe_95 5 6 0.0000000000468695
Populus trichocarpa Chr17 2 CH_ptr_59 7 15 0.0000000000000382977
Phaseolus vulgaris Chr08 2 CH_pvu_204 4 8 0.00000298518
Quercus lobata 5 2 CH_qlo_406 7 57 0.000000126727
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_161 5 8 0.000000000399314
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_64 8 24 0.00000000000000111303
Sechium edule LG03 2 CH_sed_173 3 3 0.0000309972
Solanum pennellii Spenn-ch05 2 CH_spe_65 5 8 0.0000000000872482
Solanum tuberosum ST4.03ch05 2 CH_stu_56 7 19 0.0000000000000846145
Trochodendron aralioides group5 2 CH_tar_396 3 7 0.000290891
Theobroma cacao Chromosome_2 2 CH_tca_101 5 6 0.00000000124507
Theobroma cacao Chromosome_10 2 CH_tca_12 10 15 2.46327e-21
Theobroma cacao Chromosome_4 2 CH_tca_13 12 41 8.9472e-21
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_176 5 57 0.00000998177
Vigna mungo CM024077.1 2 CH_vmu_8 9 23 9.78375e-18
Vigna mungo CM024070.1 2 CH_vmu_93 5 16 0.000000114055
Vitis vinifera chr7 2 CH_vvi_107 4 7 0.00000000323332

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001