Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CEP-peptide activity.CEP-precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_2 12 21 1.91271e-34
Actinidia chinensis Lachesis_group11 1 CH_ach_124 2 2 0.000162964
Arabidopsis lyrata scaffold_8 1 CH_aly_55 4 4 0.000000000284706
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_259 2 2 0.000841751
Aquilegia oxysepala CHR06 1 CH_aox_45 3 3 0.00000000964818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_229 3 3 0.000000112936
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_230 3 3 0.000000112936
Amborella trichopoda AmTr_v1.0_scaffold00157 1 CH_atr_35 5 7 0.000000000000351257
Brassica carinata ChrC06 1 CH_bca_154 4 5 0.00000000401457
Brassica carinata ChrC03 1 CH_bca_399 3 3 0.00000278287
Brassica carinata ChrB04 1 CH_bca_400 3 3 0.00000278287
Brassica napus A07 1 CH_bna_115 4 4 0.00000000141389
Brassica napus C07 1 CH_bna_116 4 4 0.00000000141389
Brassica napus C02 1 CH_bna_144 4 5 0.00000000706759
Brassica napus A02 1 CH_bna_444 3 5 0.0000435282
Brassica oleracea C2 1 CH_bol_184 3 4 0.00000621037
Brassica oleracea C7 1 CH_bol_61 4 5 0.00000000203
Brassica rapa A02 1 CH_bra_182 3 5 0.0000267751
Brassica rapa A07 1 CH_bra_55 4 4 0.000000000920146
Cicer arietinum L. Ca_LG7_v3 1 CH_car_33 3 3 0.0000000363466
Corylus avellana 11 1 CH_cav_411 2 2 0.000460017
Citrus clementina scaffold_7 1 CH_ccl_149 3 3 0.000000201881
Carpinus fangiana Cfa01 1 CH_cfa_341 2 2 0.000454408
Cardamine hirsuta Chr8 1 CH_chi_64 4 4 0.000000000034678
Carya illinoinensis Chr02 1 CH_cil_291 3 3 0.00000558433
Carya illinoinensis Chr01 1 CH_cil_9 13 14 1.86032e-39
Citrullus lanatus CG_Chr01 1 CH_cla_54 3 3 0.000000236102
Cucumis melo chr08 1 CH_cme_271 2 2 0.000400267
Corchorus olitorius AWUE01019240.1 1 CH_col_63 2 2 0.000292099
Carica papaya supercontig_55 1 CH_cpa_49 3 3 0.0000000542279
Capsella rubella scaffold_8 1 CH_cru_169 3 3 0.000000673604
Cucumis sativus L. chr6 1 CH_csa_126 3 4 0.000000418068
Daucus carota DCARv2_Chr7 1 CH_dca_103 3 3 0.0000000610156
Davidia involucrata GWHABJS00000014 1 CH_din_410 2 2 0.000300075
Durio zibethinus NW_019167960.1 1 CH_dzi_119 3 4 0.000000721738
Durio zibethinus NW_019167860.1 1 CH_dzi_96 3 3 0.000000180454
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_518 2 2 0.000942317
Eucalyptus grandis Chr09 1 CH_egr_176 5 5 0.0000000000000406647
Erythranthe guttata scaffold_8 1 CH_egut_169 3 3 0.000000159065
Eutrema salsugineum scaffold_6 1 CH_esa_104 3 3 0.000000730677
Fragaria x ananassa Fvb1-3 1 CH_fan_168 3 3 0.000000419082
Fragaria x ananassa Fvb1-1 1 CH_fan_62 4 5 0.000000000290767
Fragaria vesca Fvb1 1 CH_fve_41 4 4 0.0000000000030669
Gossypium hirsutum D03 1 CH_ghi_12 9 10 1.92131e-25
Gossypium hirsutum A02 1 CH_ghi_25 7 7 1.53571e-19
Glycine max Gm11 1 CH_gma_108 4 4 0.00000000207524
Glycine max Gm01 1 CH_gma_109 4 4 0.00000000207524
Glycine max Gm16 1 CH_gma_252 3 3 0.00000497029
Glycine max Gm05 1 CH_gma_253 3 3 0.00000497029
Glycine max Gm17 1 CH_gma_36 6 7 0.00000000000000219697
Gossypium raimondii Chr03 1 CH_gra_1 11 12 6.94057e-33
Lupinus albus Lalb_Chr16 1 CH_lal_125 4 17 0.00000398319
Lupinus albus Lalb_Chr05 1 CH_lal_126 3 3 0.00000400363
Lupinus albus Lalb_Chr05 1 CH_lal_127 3 3 0.00000400363
Lotus japonicus chr4 1 CH_lja_71 4 5 0.000000000691019
Lonicera japonica GWHAAZE00000007 1 CH_lonja_11 9 11 1.29095e-29
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_243 3 4 0.000001902
Malus domestica Chr15 1 CH_mdo_447 2 2 0.000113763
Manihot esculenta Chromosome12 1 CH_mes_119 4 5 0.00000000112692
Manihot esculenta Chromosome13 1 CH_mes_99 4 4 0.00000000022543
Nelumbo nucifera chr1 1 CH_nnu_28 5 6 0.000000000000075138
Nelumbo nucifera chr5 1 CH_nnu_45 4 4 0.0000000000820668
Olea europaea chr15 1 CH_oeu_11 6 9 0.0000000000000101308
Olea europaea chr18 1 CH_oeu_6 7 9 1.27524e-18
Prunus persica Pp07 1 CH_ppe_90 4 4 0.0000000000186815
Populus trichocarpa Chr07 1 CH_ptr_94 4 4 0.0000000000405549
Phaseolus vulgaris Chr03 1 CH_pvu_29 6 6 4.45291e-17
Quercus lobata 6 1 CH_qlo_87 6 8 1.9414e-17
Rhododendron simsii chr10 1 CH_rsi_553 2 2 0.000645307
Rhododendron simsii chr08 1 CH_rsi_554 2 2 0.000645307
Salix brachista GWHAAZH00000007 1 CH_sbr_104 3 3 0.000000119127
Sechium edule LG10 1 CH_sed_115 3 3 0.00000125974
Sechium edule LG14 1 CH_sed_116 3 3 0.00000125974
Schrenkiella parvula ch2-4 1 CH_spa_49 4 4 0.000000000184514
Theobroma cacao Chromosome_1 1 CH_tca_167 3 3 0.000000281615
Theobroma cacao Chromosome_8 1 CH_tca_168 3 3 0.000000281615
Trifolium pratense Tp57577_TGAC_v2_scaf_342 1 CH_tpr_15 5 6 0.000000000000031032
Vigna mungo CM024069.1 1 CH_vmu_108 3 3 0.00000035071
Acer truncatum chr3 2 CH_acertr_2 12 21 1.91271e-34
Actinidia chinensis Lachesis_group11 2 CH_ach_124 2 2 0.000162964
Arabidopsis lyrata scaffold_8 2 CH_aly_55 4 4 0.000000000284706
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_259 2 2 0.000841751
Aquilegia oxysepala CHR06 2 CH_aox_45 3 3 0.00000000964818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_229 3 3 0.000000112936
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_230 3 3 0.000000112936
Amborella trichopoda AmTr_v1.0_scaffold00157 2 CH_atr_35 5 7 0.000000000000351257
Brassica carinata ChrC06 2 CH_bca_154 4 5 0.00000000401457
Brassica carinata ChrC03 2 CH_bca_399 3 3 0.00000278287
Brassica carinata ChrB04 2 CH_bca_400 3 3 0.00000278287
Brassica oleracea C2 2 CH_bol_184 3 4 0.00000621037
Brassica oleracea C7 2 CH_bol_61 4 5 0.00000000203
Brassica rapa A02 2 CH_bra_182 3 5 0.0000267751
Brassica rapa A07 2 CH_bra_55 4 4 0.000000000920146
Cicer arietinum L. Ca_LG7_v3 2 CH_car_33 3 3 0.0000000363466
Corylus avellana 11 2 CH_cav_411 2 2 0.000460017
Citrus clementina scaffold_7 2 CH_ccl_149 3 3 0.000000201881
Carpinus fangiana Cfa01 2 CH_cfa_341 2 2 0.000454408
Cardamine hirsuta Chr8 2 CH_chi_64 4 4 0.000000000034678
Carya illinoinensis Chr02 2 CH_cil_291 3 3 0.00000558433
Carya illinoinensis Chr01 2 CH_cil_9 13 14 1.86032e-39
Citrullus lanatus CG_Chr01 2 CH_cla_54 3 3 0.000000236102
Cucumis melo chr08 2 CH_cme_271 2 2 0.000400267
Corchorus olitorius AWUE01019240.1 2 CH_col_63 2 2 0.000292099
Carica papaya supercontig_55 2 CH_cpa_49 3 3 0.0000000542279
Capsella rubella scaffold_8 2 CH_cru_169 3 3 0.000000673604
Cucumis sativus L. chr6 2 CH_csa_126 3 4 0.000000418068
Daucus carota DCARv2_Chr7 2 CH_dca_103 3 3 0.0000000610156
Davidia involucrata GWHABJS00000014 2 CH_din_410 2 2 0.000300075
Durio zibethinus NW_019167960.1 2 CH_dzi_119 3 4 0.000000721738
Durio zibethinus NW_019167860.1 2 CH_dzi_96 3 3 0.000000180454
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_518 2 2 0.000942317
Eucalyptus grandis Chr09 2 CH_egr_176 5 5 0.0000000000000406647
Eucalyptus grandis Chr06 2 CH_egr_505 3 3 0.000000847827
Erythranthe guttata scaffold_8 2 CH_egut_169 3 3 0.000000159065
Eutrema salsugineum scaffold_6 2 CH_esa_104 3 3 0.000000730677
Fragaria x ananassa Fvb1-3 2 CH_fan_168 3 3 0.000000419082
Fragaria x ananassa Fvb1-1 2 CH_fan_62 4 5 0.000000000290767
Fragaria vesca Fvb1 2 CH_fve_41 4 4 0.0000000000030669
Gossypium hirsutum D03 2 CH_ghi_12 9 10 1.92131e-25
Gossypium hirsutum A02 2 CH_ghi_25 7 7 1.53571e-19
Glycine max Gm11 2 CH_gma_108 4 4 0.00000000207524
Glycine max Gm01 2 CH_gma_109 4 4 0.00000000207524
Glycine max Gm16 2 CH_gma_252 3 3 0.00000497029
Glycine max Gm05 2 CH_gma_253 3 3 0.00000497029
Glycine max Gm17 2 CH_gma_36 6 7 0.00000000000000219697
Gossypium raimondii Chr03 2 CH_gra_1 11 12 6.94057e-33
Lupinus albus Lalb_Chr16 2 CH_lal_125 4 17 0.00000398319
Lupinus albus Lalb_Chr05 2 CH_lal_126 3 3 0.00000400363
Lupinus albus Lalb_Chr05 2 CH_lal_127 3 3 0.00000400363
Lotus japonicus chr4 2 CH_lja_71 4 5 0.000000000691019
Lonicera japonica GWHAAZE00000007 2 CH_lonja_11 9 11 1.29095e-29
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_243 3 4 0.000001902
Malus domestica Chr15 2 CH_mdo_447 2 2 0.000113763
Manihot esculenta Chromosome12 2 CH_mes_119 4 5 0.00000000112692
Manihot esculenta Chromosome13 2 CH_mes_99 4 4 0.00000000022543
Nelumbo nucifera chr1 2 CH_nnu_28 5 6 0.000000000000075138
Nelumbo nucifera chr5 2 CH_nnu_45 4 4 0.0000000000820668
Olea europaea chr15 2 CH_oeu_11 6 9 0.0000000000000101308
Olea europaea chr18 2 CH_oeu_6 7 9 1.27524e-18
Prunus persica Pp07 2 CH_ppe_90 4 4 0.0000000000186815
Populus trichocarpa Chr07 2 CH_ptr_94 4 4 0.0000000000405549
Phaseolus vulgaris Chr03 2 CH_pvu_29 6 6 4.45291e-17
Quercus lobata 6 2 CH_qlo_87 6 8 1.9414e-17
Rhododendron simsii chr10 2 CH_rsi_553 2 2 0.000645307
Rhododendron simsii chr08 2 CH_rsi_554 2 2 0.000645307
Salix brachista GWHAAZH00000007 2 CH_sbr_104 3 3 0.000000119127
Sechium edule LG10 2 CH_sed_115 3 3 0.00000125974
Sechium edule LG14 2 CH_sed_116 3 3 0.00000125974
Schrenkiella parvula ch2-4 2 CH_spa_49 4 4 0.000000000184514
Theobroma cacao Chromosome_1 2 CH_tca_167 3 3 0.000000281615
Theobroma cacao Chromosome_8 2 CH_tca_168 3 3 0.000000281615
Trifolium pratense Tp57577_TGAC_v2_scaf_342 2 CH_tpr_15 5 6 0.000000000000031032
Vigna mungo CM024069.1 2 CH_vmu_108 3 3 0.00000035071

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001