Functional clusters

Information

  • Type MapMan
  • Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.PNP-peptide activity.PNP precursor polypeptide

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_130 2 2 0.00024077
Acer truncatum chr7 1 CH_acertr_191 4 33 0.00000299811
Aquilegia oxysepala CHR07 1 CH_aox_15 5 5 0.0000000000000173791
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_682 3 32 0.000558826
Amborella trichopoda AmTr_v1.0_scaffold00019 1 CH_atr_326 2 2 0.000794407
Cannabis sativa NC_044377.1 1 CH_cansat_115 4 22 0.0000000930653
Corylus avellana 3 1 CH_cav_183 3 3 0.0000071952
Corylus avellana 2 1 CH_cav_206 3 4 0.0000287673
Corylus avellana 3 1 CH_cav_81 4 5 0.0000000206789
Coffea canephora chr6 1 CH_ccan_11 5 35 0.0000000000000448479
Citrus clementina scaffold_1 1 CH_ccl_88 4 4 0.000000000819814
Ceratophyllum demersum 5 1 CH_cde_268 2 2 0.000789796
Carya illinoinensis Chr08 1 CH_cil_132 4 4 0.0000000000900215
Corchorus olitorius AWUE01020790.1 1 CH_col_62 2 2 0.000292099
Carica papaya supercontig_75 1 CH_cpa_336 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_1360 1 CH_cqu_177 3 3 0.000000282885
Daucus carota DCARv2_Chr7 1 CH_dca_285 2 2 0.000191333
Davidia involucrata GWHABJS00000085 1 CH_din_2 9 9 4.53711e-26
Davidia involucrata GWHABJS00000085 1 CH_din_3 9 9 4.53711e-26
Durio zibethinus NW_019167860.1 1 CH_dzi_116 5 67 0.000000661159
Erythranthe guttata scaffold_10 1 CH_egut_39 5 5 0.00000000000000442844
Eutrema salsugineum scaffold_1 1 CH_esa_234 2 2 0.00022845
Gossypium hirsutum D12 1 CH_ghi_193 4 6 0.0000000108324
Gossypium hirsutum A12 1 CH_ghi_355 3 3 0.00000245979
Gossypium raimondii Chr08 1 CH_gra_50 5 6 0.00000000000111618
Helianthus annuus HanXRQChr03 1 CH_han_11 12 34 3.53666e-28
Helianthus annuus HanXRQChr03 1 CH_han_95 5 6 0.00000000000659901
Hydrangea macrophylla Hma1.2p1_0921F.1 1 CH_hma_49 3 3 0.0000000740453
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_34 7 17 4.84089e-17
Malus domestica Chr12 1 CH_mdo_188 4 13 0.0000000385586
Manihot esculenta Chromosome14 1 CH_mes_222 3 4 0.00000268424
Nelumbo nucifera chr8 1 CH_nnu_396 2 2 0.000436015
Nicotiana tabacum Nitab4.5_0000008 1 CH_nta_34 3 3 0.0000000722445
Olea europaea chr11 1 CH_oeu_34 4 7 0.00000000335236
Oryza sativa ssp. japonica chr09 1 CH_osa_124 3 4 0.000000334676
Oryza sativa ssp. japonica chr06 1 CH_osa_380 2 2 0.000792184
Petunia axillaris Peaxi162Scf00384 1 CH_pax_297 2 2 0.000422134
Petunia axillaris Peaxi162Scf00073 1 CH_pax_298 2 2 0.000422134
Prunus persica Pp01 1 CH_ppe_196 3 3 0.000000292152
Papaver somniferum NC_039362.1 1 CH_pso_138 4 8 0.000000000503773
Quercus lobata CM012294 1 CH_qlo_170 8 54 0.00000000000048024
Quercus lobata CM012294 1 CH_qlo_252 5 8 0.000000000196047
Quercus lobata 3 1 CH_qlo_280 5 10 0.000000000881367
Quercus lobata CM012294 1 CH_qlo_577 3 3 0.0000103959
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_334 3 5 0.000000834234
Salvia bowleyana GWHASIU00000002 1 CH_sbo_9 10 23 4.47106e-28
Sequoiadendron giganteum chr5 1 CH_sgi_304 4 4 0.000000000072839
Sequoiadendron giganteum chr10 1 CH_sgi_562 3 3 0.00000042718
Selaginella moellendorffii scaffold_42 1 CH_smo_17 5 6 0.00000000000158014
Schrenkiella parvula ch7-5 1 CH_spa_252 2 2 0.000472404
Selenicereus undatus Scaffold_33676 1 CH_sun_51 3 3 0.000000443539
Theobroma cacao Chromosome_9 1 CH_tca_190 3 3 0.000000675875
Tripterygium wilfordii NC_052254.1 1 CH_twi_12 7 7 2.16442e-19
Tripterygium wilfordii NC_052235.1 1 CH_twi_303 3 13 0.000744485
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_107 3 3 0.000000129529
Vitis vinifera chr4 1 CH_vvi_105 6 65 0.00000000216108
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_130 2 2 0.00024077
Acer truncatum chr7 2 CH_acertr_191 4 33 0.00000299811
Aquilegia oxysepala CHR07 2 CH_aox_15 5 5 0.0000000000000173791
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_682 3 32 0.000558826
Amborella trichopoda AmTr_v1.0_scaffold00019 2 CH_atr_326 2 2 0.000794407
Cannabis sativa NC_044377.1 2 CH_cansat_115 4 22 0.0000000930653
Corylus avellana 3 2 CH_cav_183 3 3 0.0000071952
Corylus avellana 2 2 CH_cav_206 3 4 0.0000287673
Corylus avellana 3 2 CH_cav_81 4 5 0.0000000206789
Coffea canephora chr6 2 CH_ccan_11 5 35 0.0000000000000448479
Citrus clementina scaffold_1 2 CH_ccl_88 4 4 0.000000000819814
Ceratophyllum demersum 5 2 CH_cde_268 2 2 0.000789796
Carya illinoinensis Chr08 2 CH_cil_132 4 4 0.0000000000900215
Corchorus olitorius AWUE01020790.1 2 CH_col_62 2 2 0.000292099
Carica papaya supercontig_75 2 CH_cpa_336 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_1360 2 CH_cqu_177 3 3 0.000000282885
Daucus carota DCARv2_Chr7 2 CH_dca_285 2 2 0.000191333
Davidia involucrata GWHABJS00000085 2 CH_din_2 9 9 4.53711e-26
Davidia involucrata GWHABJS00000085 2 CH_din_3 9 9 4.53711e-26
Durio zibethinus NW_019167860.1 2 CH_dzi_116 5 67 0.000000661159
Eucalyptus grandis Chr03 2 CH_egr_520 3 3 0.00000113044
Eucalyptus grandis Chr02 2 CH_egr_566 3 4 0.00000452072
Eucalyptus grandis Chr03 2 CH_egr_567 3 4 0.00000452072
Erythranthe guttata scaffold_10 2 CH_egut_39 5 5 0.00000000000000442844
Eutrema salsugineum scaffold_1 2 CH_esa_234 2 2 0.00022845
Gossypium hirsutum D12 2 CH_ghi_193 4 6 0.0000000108324
Gossypium hirsutum A12 2 CH_ghi_355 3 3 0.00000245979
Gossypium raimondii Chr08 2 CH_gra_50 5 6 0.00000000000111618
Helianthus annuus HanXRQChr03 2 CH_han_11 12 34 3.53666e-28
Helianthus annuus HanXRQChr03 2 CH_han_95 5 6 0.00000000000659901
Hydrangea macrophylla Hma1.2p1_0921F.1 2 CH_hma_49 3 3 0.0000000740453
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_34 7 17 4.84089e-17
Malus domestica Chr12 2 CH_mdo_188 4 13 0.0000000385586
Manihot esculenta Chromosome14 2 CH_mes_222 3 4 0.00000268424
Nelumbo nucifera chr8 2 CH_nnu_396 2 2 0.000436015
Nicotiana tabacum Nitab4.5_0000008 2 CH_nta_34 3 3 0.0000000722445
Olea europaea chr11 2 CH_oeu_34 4 7 0.00000000335236
Oryza sativa ssp. japonica chr09 2 CH_osa_124 3 4 0.000000334676
Oryza sativa ssp. japonica chr06 2 CH_osa_380 2 2 0.000792184
Petunia axillaris Peaxi162Scf00384 2 CH_pax_297 2 2 0.000422134
Petunia axillaris Peaxi162Scf00073 2 CH_pax_298 2 2 0.000422134
Prunus persica Pp01 2 CH_ppe_196 3 3 0.000000292152
Papaver somniferum NC_039362.1 2 CH_pso_138 4 8 0.000000000503773
Quercus lobata CM012294 2 CH_qlo_170 8 54 0.00000000000048024
Quercus lobata CM012294 2 CH_qlo_252 5 8 0.000000000196047
Quercus lobata 3 2 CH_qlo_280 5 10 0.000000000881367
Quercus lobata CM012294 2 CH_qlo_577 3 3 0.0000103959
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_334 3 5 0.000000834234
Salvia bowleyana GWHASIU00000002 2 CH_sbo_9 10 23 4.47106e-28
Sequoiadendron giganteum chr5 2 CH_sgi_304 4 4 0.000000000072839
Sequoiadendron giganteum chr10 2 CH_sgi_562 3 3 0.00000042718
Selaginella moellendorffii scaffold_42 2 CH_smo_17 5 6 0.00000000000158014
Schrenkiella parvula ch7-5 2 CH_spa_252 2 2 0.000472404
Selenicereus undatus Scaffold_33676 2 CH_sun_51 3 3 0.000000443539
Theobroma cacao Chromosome_9 2 CH_tca_190 3 3 0.000000675875
Tripterygium wilfordii NC_052254.1 2 CH_twi_12 7 7 2.16442e-19
Tripterygium wilfordii NC_052235.1 2 CH_twi_303 3 13 0.000744485
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_107 3 3 0.000000129529
Vitis vinifera chr4 2 CH_vvi_105 6 65 0.00000000216108

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001