Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.IMA/FEP-peptide activity.IMA/FEP precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 1 | CH_acertr_385 | 2 | 3 | 0.000211484 |
| Actinidia chinensis | Lachesis_group18 | 1 | CH_ach_25 | 3 | 3 | 0.0000000177053 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_6 | 7 | 7 | 5.21187e-23 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_326 | 2 | 3 | 0.000257837 |
| Brassica napus | C08 | 1 | CH_bna_220 | 3 | 3 | 0.00000023489 |
| Brassica oleracea | C8 | 1 | CH_bol_377 | 2 | 2 | 0.000490292 |
| Cardamine hirsuta | Chr1 | 1 | CH_chi_33 | 5 | 6 | 0.00000000000000616385 |
| Citrullus lanatus | CG_Chr11 | 1 | CH_cla_28 | 3 | 3 | 0.0000000118051 |
| Cucumis melo | chr05 | 1 | CH_cme_78 | 3 | 3 | 0.0000000267031 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1765 | 1 | CH_cqu_352 | 2 | 2 | 0.000142146 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_49 | 4 | 4 | 0.00000000000586363 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_284 | 2 | 2 | 0.000191333 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_18 | 5 | 5 | 3.0411e-17 |
| Fragaria x ananassa | Fvb1-3 | 1 | CH_fan_463 | 2 | 2 | 0.000277554 |
| Fragaria x ananassa | Fvb1-1 | 1 | CH_fan_464 | 2 | 2 | 0.000277554 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_102 | 4 | 4 | 0.00000000000719646 |
| Gossypium hirsutum | A05 | 1 | CH_ghi_235 | 3 | 3 | 0.0000000898358 |
| Glycine max | Gm06 | 1 | CH_gma_181 | 3 | 4 | 0.000000302516 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_113 | 3 | 3 | 0.0000000172451 |
| Lupinus albus | Lalb_Chr08 | 1 | CH_lal_253 | 2 | 2 | 0.000157447 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_18 | 7 | 12 | 9.20325e-21 |
| Medicago truncatula | chr2 | 1 | CH_mtr_16 | 9 | 10 | 2.3055e-28 |
| Medicago truncatula | chr4 | 1 | CH_mtr_204 | 4 | 6 | 0.00000000312323 |
| Petunia axillaris | Peaxi162Scf00984 | 1 | CH_pax_19 | 5 | 5 | 0.000000000000023159 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_549 | 2 | 3 | 0.000119593 |
| Simmondsia chinensis | GWHAASQ00000008 | 1 | CH_sci_48 | 3 | 4 | 0.0000000434956 |
| Solanum lycopersicum | SL4.0ch12 | 1 | CH_sly_28 | 6 | 6 | 1.09743e-19 |
| Solanum pennellii | Spenn-ch12 | 1 | CH_spe_6 | 8 | 11 | 8.05781e-25 |
| Solanum tuberosum | ST4.03ch12 | 1 | CH_stu_4 | 10 | 14 | 1.90335e-31 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_339 | 2 | 2 | 0.000219716 |
| Acer truncatum | chr7 | 2 | CH_acertr_385 | 2 | 3 | 0.000211484 |
| Actinidia chinensis | Lachesis_group18 | 2 | CH_ach_25 | 3 | 3 | 0.0000000177053 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_6 | 7 | 7 | 5.21187e-23 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_326 | 2 | 3 | 0.000257837 |
| Brassica oleracea | C8 | 2 | CH_bol_377 | 2 | 2 | 0.000490292 |
| Cardamine hirsuta | Chr1 | 2 | CH_chi_33 | 5 | 6 | 0.00000000000000616385 |
| Citrullus lanatus | CG_Chr11 | 2 | CH_cla_28 | 3 | 3 | 0.0000000118051 |
| Cucumis melo | chr05 | 2 | CH_cme_78 | 3 | 3 | 0.0000000267031 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1765 | 2 | CH_cqu_352 | 2 | 2 | 0.000142146 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_49 | 4 | 4 | 0.00000000000586363 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_284 | 2 | 2 | 0.000191333 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_18 | 5 | 5 | 3.0411e-17 |
| Fragaria x ananassa | Fvb1-3 | 2 | CH_fan_463 | 2 | 2 | 0.000277554 |
| Fragaria x ananassa | Fvb1-1 | 2 | CH_fan_464 | 2 | 2 | 0.000277554 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_102 | 4 | 4 | 0.00000000000719646 |
| Gossypium hirsutum | A05 | 2 | CH_ghi_235 | 3 | 3 | 0.0000000898358 |
| Glycine max | Gm06 | 2 | CH_gma_181 | 3 | 4 | 0.000000302516 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_113 | 3 | 3 | 0.0000000172451 |
| Lupinus albus | Lalb_Chr08 | 2 | CH_lal_253 | 2 | 2 | 0.000157447 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_18 | 7 | 12 | 9.20325e-21 |
| Petunia axillaris | Peaxi162Scf00984 | 2 | CH_pax_19 | 5 | 5 | 0.000000000000023159 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_549 | 2 | 3 | 0.000119593 |
| Simmondsia chinensis | GWHAASQ00000008 | 2 | CH_sci_48 | 3 | 4 | 0.0000000434956 |
| Solanum lycopersicum | SL4.0ch12 | 2 | CH_sly_28 | 6 | 6 | 1.09743e-19 |
| Solanum pennellii | Spenn-ch12 | 2 | CH_spe_6 | 8 | 11 | 8.05781e-25 |
| Solanum tuberosum | ST4.03ch12 | 2 | CH_stu_4 | 10 | 14 | 1.90335e-31 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_339 | 2 | 2 | 0.000219716 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |