Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.CLE-peptide activity.CLE-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-5 | 1 | CH_aar_104 | 3 | 3 | 0.00000699196 |
| Arabidopsis lyrata | scaffold_4 | 1 | CH_aly_85 | 4 | 4 | 0.0000000151412 |
| Arabidopsis thaliana | Chr2 | 1 | CH_ath_145 | 4 | 10 | 0.000000259567 |
| Brassica carinata | ChrB06 | 1 | CH_bca_378 | 4 | 7 | 0.00000170303 |
| Brassica napus | C04 | 1 | CH_bna_553 | 3 | 4 | 0.000211205 |
| Brassica oleracea | C4 | 1 | CH_bol_219 | 3 | 3 | 0.0000212249 |
| Brassica rapa | A04 | 1 | CH_bra_186 | 3 | 3 | 0.0000294718 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_510 | 3 | 8 | 0.0000388235 |
| Corylus avellana | 5 | 1 | CH_cav_437 | 3 | 8 | 0.000561437 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_209 | 3 | 5 | 0.0000584557 |
| Cardamine hirsuta | Chr4 | 1 | CH_chi_122 | 4 | 5 | 0.0000000868844 |
| Carya illinoinensis | Chr04 | 1 | CH_cil_326 | 3 | 3 | 0.0000344857 |
| Corchorus olitorius | AWUE01016365.1 | 1 | CH_col_111 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_6 | 1 | CH_cpa_131 | 3 | 4 | 0.0000303521 |
| Capsella rubella | scaffold_4 | 1 | CH_cru_103 | 4 | 4 | 0.0000000278534 |
| Davidia involucrata | GWHABJS00000011 | 1 | CH_din_15 | 6 | 8 | 0.00000000000000243891 |
| Eutrema salsugineum | scaffold_10 | 1 | CH_esa_138 | 3 | 3 | 0.0000200066 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_240 | 4 | 4 | 0.000000110203 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_241 | 4 | 4 | 0.000000110203 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_296 | 4 | 5 | 0.000000550537 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_137 | 4 | 5 | 0.000000170489 |
| Lupinus albus | Lalb_Chr14 | 1 | CH_lal_226 | 3 | 3 | 0.0000913109 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_351 | 3 | 4 | 0.0000578948 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_181 | 4 | 5 | 0.000000311868 |
| Medicago truncatula | chr2 | 1 | CH_mtr_463 | 3 | 3 | 0.0000165731 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_12 | 10 | 41 | 2.88047e-19 |
| Oryza sativa ssp. japonica | chr06 | 1 | CH_osa_177 | 3 | 3 | 0.0000169863 |
| Petunia axillaris | Peaxi162Scf00069 | 1 | CH_pax_346 | 2 | 2 | 0.000703556 |
| Populus trichocarpa | Chr19 | 1 | CH_ptr_483 | 3 | 5 | 0.000574306 |
| Phaseolus vulgaris | Chr07 | 1 | CH_pvu_157 | 4 | 5 | 0.000000311247 |
| Phaseolus vulgaris | Chr11 | 1 | CH_pvu_244 | 3 | 3 | 0.0000529991 |
| Phaseolus vulgaris | Chr03 | 1 | CH_pvu_245 | 3 | 3 | 0.0000529991 |
| Quercus lobata | 5 | 1 | CH_qlo_377 | 4 | 8 | 0.0000000394116 |
| Schrenkiella parvula | ch4-6 | 1 | CH_spa_130 | 3 | 3 | 0.00000423101 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_273 | 3 | 4 | 0.0000651016 |
| Aethionema arabicum | LG-5 | 2 | CH_aar_104 | 3 | 3 | 0.00000699196 |
| Arabidopsis lyrata | scaffold_4 | 2 | CH_aly_85 | 4 | 4 | 0.0000000151412 |
| Arabidopsis thaliana | Chr2 | 2 | CH_ath_145 | 4 | 10 | 0.000000259567 |
| Brassica carinata | ChrB06 | 2 | CH_bca_378 | 4 | 7 | 0.00000170303 |
| Brassica oleracea | C4 | 2 | CH_bol_219 | 3 | 3 | 0.0000212249 |
| Brassica rapa | A04 | 2 | CH_bra_186 | 3 | 3 | 0.0000294718 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_510 | 3 | 8 | 0.0000388235 |
| Corylus avellana | 5 | 2 | CH_cav_437 | 3 | 8 | 0.000561437 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_209 | 3 | 5 | 0.0000584557 |
| Cardamine hirsuta | Chr4 | 2 | CH_chi_122 | 4 | 5 | 0.0000000868844 |
| Carya illinoinensis | Chr04 | 2 | CH_cil_326 | 3 | 3 | 0.0000344857 |
| Corchorus olitorius | AWUE01016365.1 | 2 | CH_col_111 | 2 | 2 | 0.000876296 |
| Carica papaya | supercontig_6 | 2 | CH_cpa_131 | 3 | 4 | 0.0000303521 |
| Capsella rubella | scaffold_4 | 2 | CH_cru_103 | 4 | 4 | 0.0000000278534 |
| Davidia involucrata | GWHABJS00000011 | 2 | CH_din_15 | 6 | 8 | 0.00000000000000243891 |
| Eutrema salsugineum | scaffold_10 | 2 | CH_esa_138 | 3 | 3 | 0.0000200066 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_240 | 4 | 4 | 0.000000110203 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_241 | 4 | 4 | 0.000000110203 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_296 | 4 | 5 | 0.000000550537 |
| Gossypium hirsutum | A05 | 2 | CH_ghi_731 | 3 | 4 | 0.000407279 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_137 | 4 | 5 | 0.000000170489 |
| Lupinus albus | Lalb_Chr14 | 2 | CH_lal_226 | 3 | 3 | 0.0000913109 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_351 | 3 | 4 | 0.0000578948 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_181 | 4 | 5 | 0.000000311868 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_12 | 10 | 41 | 2.88047e-19 |
| Oryza sativa ssp. japonica | chr06 | 2 | CH_osa_177 | 3 | 3 | 0.0000169863 |
| Petunia axillaris | Peaxi162Scf00069 | 2 | CH_pax_346 | 2 | 2 | 0.000703556 |
| Populus trichocarpa | Chr19 | 2 | CH_ptr_483 | 3 | 5 | 0.000574306 |
| Phaseolus vulgaris | Chr07 | 2 | CH_pvu_157 | 4 | 5 | 0.000000311247 |
| Phaseolus vulgaris | Chr11 | 2 | CH_pvu_244 | 3 | 3 | 0.0000529991 |
| Phaseolus vulgaris | Chr03 | 2 | CH_pvu_245 | 3 | 3 | 0.0000529991 |
| Quercus lobata | 5 | 2 | CH_qlo_377 | 4 | 8 | 0.0000000394116 |
| Schrenkiella parvula | ch4-6 | 2 | CH_spa_130 | 3 | 3 | 0.00000423101 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_273 | 3 | 4 | 0.0000651016 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |