Functional clusters
Information
- Type MapMan
- Description Phytohormone action.signalling peptides.NCRP (non-cysteine-rich-peptide) category.PIP/PIPL-peptide activity.PIP/PIPL-precursor polypeptide
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr2 | 1 | CH_acertr_12 | 8 | 37 | 4.72588e-18 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_203 | 3 | 7 | 0.0000156769 |
| Brassica carinata | Contig1001 | 1 | CH_bca_150 | 4 | 4 | 0.00000000361652 |
| Beta vulgaris | Scaffold_0007 | 1 | CH_bvu_293 | 2 | 2 | 0.000827917 |
| Corylus avellana | 9 | 1 | CH_cav_157 | 3 | 3 | 0.00000193988 |
| Carpinus fangiana | Cfa06 | 1 | CH_cfa_12 | 10 | 24 | 4.00093e-22 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_171 | 3 | 3 | 0.0000114432 |
| Carpinus fangiana | Cfa07 | 1 | CH_cfa_205 | 3 | 4 | 0.0000457478 |
| Carya illinoinensis | Chr01 | 1 | CH_cil_37 | 7 | 8 | 6.94888e-19 |
| Eucalyptus grandis | Chr08 | 1 | CH_egr_30 | 10 | 11 | 2.75126e-29 |
| Fragaria x ananassa | Fvb1-2 | 1 | CH_fan_160 | 4 | 9 | 0.000000242181 |
| Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_285 | 4 | 21 | 0.0000114646 |
| Fragaria x ananassa | Fvb2-1 | 1 | CH_fan_316 | 4 | 24 | 0.0000203373 |
| Fragaria x ananassa | Fvb1-4 | 1 | CH_fan_444 | 3 | 7 | 0.000191408 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_441 | 3 | 21 | 0.000579894 |
| Gossypium hirsutum | A06 | 1 | CH_ghi_439 | 3 | 4 | 0.0000360752 |
| Lupinus albus | Lalb_Chr21 | 1 | CH_lal_138 | 3 | 4 | 0.00000601432 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_235 | 3 | 3 | 0.00000144258 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_141 | 3 | 3 | 0.0000000353808 |
| Manihot esculenta | Chromosome05 | 1 | CH_mes_263 | 3 | 4 | 0.0000297428 |
| Manihot esculenta | Chromosome15 | 1 | CH_mes_264 | 3 | 4 | 0.0000297428 |
| Medicago truncatula | chr1 | 1 | CH_mtr_158 | 4 | 4 | 0.000000000103002 |
| Nelumbo nucifera | chr5 | 1 | CH_nnu_293 | 3 | 9 | 0.0000526459 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_59 | 5 | 24 | 0.000000000910024 |
| Petunia axillaris | Peaxi162Scf00365 | 1 | CH_pax_41 | 4 | 6 | 0.000000000548428 |
| Prunus persica | Pp01 | 1 | CH_ppe_261 | 3 | 4 | 0.00000734342 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_24 | 5 | 8 | 0.0000000000000652998 |
| Quercus lobata | CM012294 | 1 | CH_qlo_369 | 4 | 5 | 0.0000000261032 |
| Quercus lobata | 10 | 1 | CH_qlo_4 | 16 | 20 | 3.12515e-46 |
| Rhododendron simsii | chr07 | 1 | CH_rsi_278 | 3 | 6 | 0.0000104886 |
| Solanum lycopersicum | SL4.0ch07 | 1 | CH_sly_60 | 5 | 7 | 0.00000000000047098 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_171 | 3 | 3 | 0.000000489661 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_215 | 3 | 3 | 0.000000472706 |
| Trochodendron aralioides | group14 | 1 | CH_tar_24 | 5 | 5 | 0.0000000000000771844 |
| Theobroma cacao | Chromosome_7 | 1 | CH_tca_173 | 4 | 8 | 0.000000319186 |
| Theobroma cacao | Chromosome_8 | 1 | CH_tca_253 | 3 | 4 | 0.000031172 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_82 | 1 | CH_tpr_125 | 3 | 3 | 0.000000722019 |
| Acer truncatum | chr2 | 2 | CH_acertr_12 | 8 | 37 | 4.72588e-18 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_203 | 3 | 7 | 0.0000156769 |
| Brassica carinata | Contig1001 | 2 | CH_bca_150 | 4 | 4 | 0.00000000361652 |
| Beta vulgaris | Scaffold_0007 | 2 | CH_bvu_293 | 2 | 2 | 0.000827917 |
| Corylus avellana | 9 | 2 | CH_cav_157 | 3 | 3 | 0.00000193988 |
| Carpinus fangiana | Cfa06 | 2 | CH_cfa_12 | 10 | 24 | 4.00093e-22 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_171 | 3 | 3 | 0.0000114432 |
| Carpinus fangiana | Cfa07 | 2 | CH_cfa_205 | 3 | 4 | 0.0000457478 |
| Carya illinoinensis | Chr01 | 2 | CH_cil_37 | 7 | 8 | 6.94888e-19 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_30 | 10 | 11 | 2.75126e-29 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_561 | 3 | 3 | 0.00000419289 |
| Fragaria x ananassa | Fvb1-2 | 2 | CH_fan_160 | 4 | 9 | 0.000000242181 |
| Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_285 | 4 | 21 | 0.0000114646 |
| Fragaria x ananassa | Fvb2-1 | 2 | CH_fan_316 | 4 | 24 | 0.0000203373 |
| Fragaria x ananassa | Fvb1-4 | 2 | CH_fan_444 | 3 | 7 | 0.000191408 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_441 | 3 | 21 | 0.000579894 |
| Gossypium hirsutum | A06 | 2 | CH_ghi_439 | 3 | 4 | 0.0000360752 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_580 | 3 | 6 | 0.000180245 |
| Lupinus albus | Lalb_Chr21 | 2 | CH_lal_138 | 3 | 4 | 0.00000601432 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_235 | 3 | 3 | 0.00000144258 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_141 | 3 | 3 | 0.0000000353808 |
| Manihot esculenta | Chromosome05 | 2 | CH_mes_263 | 3 | 4 | 0.0000297428 |
| Manihot esculenta | Chromosome15 | 2 | CH_mes_264 | 3 | 4 | 0.0000297428 |
| Nelumbo nucifera | chr5 | 2 | CH_nnu_293 | 3 | 9 | 0.0000526459 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_59 | 5 | 24 | 0.000000000910024 |
| Petunia axillaris | Peaxi162Scf00365 | 2 | CH_pax_41 | 4 | 6 | 0.000000000548428 |
| Prunus persica | Pp01 | 2 | CH_ppe_261 | 3 | 4 | 0.00000734342 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_24 | 5 | 8 | 0.0000000000000652998 |
| Quercus lobata | CM012294 | 2 | CH_qlo_369 | 4 | 5 | 0.0000000261032 |
| Quercus lobata | 10 | 2 | CH_qlo_4 | 16 | 20 | 3.12515e-46 |
| Rhododendron simsii | chr07 | 2 | CH_rsi_278 | 3 | 6 | 0.0000104886 |
| Solanum lycopersicum | SL4.0ch07 | 2 | CH_sly_60 | 5 | 7 | 0.00000000000047098 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_171 | 3 | 3 | 0.000000489661 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_215 | 3 | 3 | 0.000000472706 |
| Trochodendron aralioides | group14 | 2 | CH_tar_24 | 5 | 5 | 0.0000000000000771844 |
| Theobroma cacao | Chromosome_7 | 2 | CH_tca_173 | 4 | 8 | 0.000000319186 |
| Theobroma cacao | Chromosome_8 | 2 | CH_tca_253 | 3 | 4 | 0.000031172 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_82 | 2 | CH_tpr_125 | 3 | 3 | 0.000000722019 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |