Functional clusters
Information
- Type MapMan
- Description Photosynthesis.carbon dioxide-bicarbonate interconversion.beta-type carbonic anhydrase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 1 | CH_acertr_64 | 4 | 5 | 0.00000000066213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 1 | CH_amhyb_247 | 2 | 2 | 0.000505051 |
| Brassica carinata | ChrC08 | 1 | CH_bca_160 | 4 | 6 | 0.00000000656902 |
| Brassica napus | C06 | 1 | CH_bna_117 | 4 | 5 | 0.0000000016805 |
| Brassica oleracea | C6 | 1 | CH_bol_181 | 3 | 5 | 0.00000583171 |
| Cannabis sativa | NC_044372.1 | 1 | CH_cansat_17 | 7 | 10 | 2.49999e-19 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_393 | 2 | 2 | 0.000757346 |
| Malus domestica | Chr10 | 1 | CH_mdo_292 | 3 | 5 | 0.00000258786 |
| Medicago truncatula | chr3 | 1 | CH_mtr_343 | 3 | 4 | 0.000000567153 |
| Nicotiana tabacum | Nitab4.5_0000203 | 1 | CH_nta_114 | 2 | 2 | 0.000109727 |
| Oryza sativa ssp. japonica | chr01 | 1 | CH_osa_280 | 2 | 3 | 0.000158437 |
| Punica granatum | NC_045128.1 | 1 | CH_pgr_372 | 2 | 2 | 0.000750356 |
| Papaver somniferum | NC_039360.1 | 1 | CH_pso_706 | 2 | 2 | 0.000810838 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_638 | 3 | 20 | 0.000227858 |
| Salix brachista | GWHAAZH00000015 | 1 | CH_sbr_29 | 5 | 5 | 0.0000000000000936732 |
| Trochodendron aralioides | group0 | 1 | CH_tar_565 | 2 | 2 | 0.000900549 |
| Zea mays | 3 | 1 | CH_zma_261 | 2 | 2 | 0.000511313 |
| Acer truncatum | chr9 | 2 | CH_acertr_64 | 4 | 5 | 0.00000000066213 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 2 | CH_amhyb_247 | 2 | 2 | 0.000505051 |
| Brassica carinata | ChrC08 | 2 | CH_bca_160 | 4 | 6 | 0.00000000656902 |
| Brassica oleracea | C6 | 2 | CH_bol_181 | 3 | 5 | 0.00000583171 |
| Cannabis sativa | NC_044372.1 | 2 | CH_cansat_17 | 7 | 10 | 2.49999e-19 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_393 | 2 | 2 | 0.000757346 |
| Malus domestica | Chr10 | 2 | CH_mdo_292 | 3 | 5 | 0.00000258786 |
| Nicotiana tabacum | Nitab4.5_0000203 | 2 | CH_nta_114 | 2 | 2 | 0.000109727 |
| Oryza sativa ssp. japonica | chr01 | 2 | CH_osa_280 | 2 | 3 | 0.000158437 |
| Punica granatum | NC_045128.1 | 2 | CH_pgr_372 | 2 | 2 | 0.000750356 |
| Papaver somniferum | NC_039360.1 | 2 | CH_pso_706 | 2 | 2 | 0.000810838 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_638 | 3 | 20 | 0.000227858 |
| Salix brachista | GWHAAZH00000015 | 2 | CH_sbr_29 | 5 | 5 | 0.0000000000000936732 |
| Trochodendron aralioides | group0 | 2 | CH_tar_565 | 2 | 2 | 0.000900549 |
| Zea mays | 3 | 2 | CH_zma_261 | 2 | 2 | 0.000511313 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |