Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photorespiration

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Prasinoderma coloniale Chr11 1 CH_pco_5 3 3 0.0000654587
Sechium edule LG07 1 CH_sed_182 5 36 0.0000530494
Zea mays 2 1 CH_zma_175 3 4 0.000121804
Prasinoderma coloniale Chr11 2 CH_pco_5 3 3 0.0000654587
Sechium edule LG07 2 CH_sed_182 5 36 0.0000530494
Zea mays 2 2 CH_zma_175 3 4 0.000121804

Available child term results

Ontology identifier Description Number of clusters
1.3.1 Photosynthesis.photorespiration.phosphoglycolate phosphatase 17
1.3.2 Photosynthesis.photorespiration.glycolate oxidase 43
1.3.4.1 Photosynthesis.photorespiration.glycine decarboxylase complex.glycine dehydrogenase component P-protein 2
1.3.4.4 Photosynthesis.photorespiration.glycine decarboxylase complex.lipoamide-containing component H-protein 10
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM) 2
1.3.6.1 Photosynthesis.photorespiration.hydroxypyruvate reductase activities.peroxisomal hydroxypyruvate reductase (HPR1) 4
1.3.6.2 Photosynthesis.photorespiration.hydroxypyruvate reductase activities.non-peroxisomal hydroxypyruvate reductase (HPR) 142
1.3.7 Photosynthesis.photorespiration.glycerate kinase 2
1.3.8 Photosynthesis.photorespiration.glycerate:glycolate transporter 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001