Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.xanthophyll cycle.zeaxanthin epoxidase (ZEP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC04 1 CH_bca_236 3 4 0.0000000959568
Davidia involucrata GWHABJS00000014 1 CH_din_314 2 2 0.000150038
Prunus persica Pp02 1 CH_ppe_396 2 2 0.000223789
Sechium edule LG05 1 CH_sed_248 2 2 0.000214026
Trochodendron aralioides group14 1 CH_tar_494 2 2 0.000600366
Trochodendron aralioides group5 1 CH_tar_495 2 2 0.000600366
Brassica carinata ChrC04 2 CH_bca_236 3 4 0.0000000959568
Davidia involucrata GWHABJS00000014 2 CH_din_314 2 2 0.000150038
Eucalyptus grandis Chr09 2 CH_egr_658 2 2 0.0000585274
Prunus persica Pp02 2 CH_ppe_396 2 2 0.000223789
Sechium edule LG05 2 CH_sed_248 2 2 0.000214026
Trochodendron aralioides group14 2 CH_tar_494 2 2 0.000600366
Trochodendron aralioides group5 2 CH_tar_495 2 2 0.000600366

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001