Functional clusters
Information
- Type MapMan
- Description Photosynthesis.photophosphorylation.photosystem II.assembly.LHCII-stabilizing factor (SEP3)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aquilegia oxysepala | CHR03 | 1 | CH_aox_147 | 2 | 2 | 0.0000801989 |
Amborella trichopoda | AmTr_v1.0_scaffold00002 | 1 | CH_atr_169 | 2 | 2 | 0.0000794407 |
Medicago truncatula | chr4 | 1 | CH_mtr_502 | 2 | 2 | 0.0000410863 |
Olea europaea | scaffold372 | 1 | CH_oeu_222 | 2 | 2 | 0.000160137 |
Physcomitrium patens | Chr14 | 1 | CH_ppa_209 | 2 | 2 | 0.000367636 |
Papaver somniferum | NC_039364.1 | 1 | CH_pso_474 | 2 | 2 | 0.00013514 |
Papaver somniferum | NC_039365.1 | 1 | CH_pso_475 | 2 | 2 | 0.00013514 |
Trochodendron aralioides | group15 | 1 | CH_tar_333 | 2 | 2 | 0.00018011 |
Aquilegia oxysepala | CHR03 | 2 | CH_aox_147 | 2 | 2 | 0.0000801989 |
Amborella trichopoda | AmTr_v1.0_scaffold00002 | 2 | CH_atr_169 | 2 | 2 | 0.0000794407 |
Olea europaea | scaffold372 | 2 | CH_oeu_222 | 2 | 2 | 0.000160137 |
Physcomitrium patens | Chr14 | 2 | CH_ppa_209 | 2 | 2 | 0.000367636 |
Papaver somniferum | NC_039364.1 | 2 | CH_pso_474 | 2 | 2 | 0.00013514 |
Papaver somniferum | NC_039365.1 | 2 | CH_pso_475 | 2 | 2 | 0.00013514 |
Trochodendron aralioides | group15 | 2 | CH_tar_333 | 2 | 2 | 0.00018011 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |